Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g0603 ATGTCTGATATCGATGATCACGCTTCCCTTCGTGGTCGTTCATCCCCCAACAAGTCAATGTCTCGTGGTTCTACTCATGAGGGTATGAGGATGAGAAAACGAGATGGAGAGAGGAAAAGCTTTCAAGACCGCCATCACAGAGACTATAAGGATGGAGGTTTTATGGGAAGGGGCAGATATGACAGTTATGATCGTCACCACGCCCGTGACAATGATAGGCATAATGACCGTGTACGAAATGGAGAAACTAAGTACAAATACGGTGCACATTCAAAGAGATCTAGGAGGGAATCAAGATCTAGATCACGATCCAAATCTCCTTCTCGTTCTCGTTCTCGTTCCGAAAGCAAAAGGACCTCTGGTTTTGACATGGCACCACCCGCAGGGGATGTAGCAGCTGCTGTTTCAGGGCAAATGCCGGGTATTACTCAGATGATTCAAGGAACTTCACAAAATTTGTCACCGTTTGGAATATCACAGATTGGAGCGCTTTCCCTAATGCAAGTTCAACCTATGACACAGCAGGCTACAAGGCATGCGCGGCGAGTTTATGTTGGTGGGCTTCCACCTTTGACTAATGAACAGGCAATTGCAGCTTTCTTCAGCCAGGTCATGATTGCTATTGGGGGAAATTCTGCTGGAGCAGGTGATTCTGTTGTCAATGTCTACATCAATCATGAGAAGAAATTTGCATTTGTGGAGATGAGAACTGTTGAAGAAGCTAGTAATGCAATGGCATTGGATGGAATAATATTTGAGGGTGTTGCTGTGAGGGTTCGTAGGCCAACAGACTATAACCCTTCATTAGCTGCTGCTCTAGGTCCTAGCCAGCCTAGTCCACACCTTAACTTATCTGCTGTTGGACTTGCTGTAGGTGCCATTGGTGGAACTGAGGGACTTGACCGCATCTTTGTAGGTGGGCTACCATACTACTTTACTGAAGAACAAATAAAAGAATTGCTACAAGCTTTTGGTCCTCTCCGGGCTTTTGATATAGTTAGGGATAAAGACACCGGAAATTCTAAAGGTTATGGTTTCTGCACCTATCAGGATCCAGCAGTAACAGACATTGCTTGTGCTTCTCTCAATGGCCTTAAAATGGGTGATAAAACATTGACTGTGAGGCGAGCTACTGTCAGTGGACATTCTAAAACAGAACAGGAGCACGTCTTTGCACGGGCACAACAGCATATAGCTATGCAGAAAATAGCGCTGGAAGTTGGTGGGTTAAATGTTCCGGCAGTTGAAAGAGTGCCAACTACAAGTGATGAAACTCCCACTAAAGTTTTATGTTTGACGGAGGCCGTTACAATTGATCAGTTGAGGGATGATGAAGAGTATGAAGAAATATTGGAAGACATGCGGGACGAATGCTGCAAATTCGGAACCTTGGTGAATGTTGTTATTCCTCGTCCGAATCACAGCGGCGAGCTGCCTCCAGGAATCGGGAAGGTGTTCTTGGAATACTCTGATAATGCTGGTTGTTTCGCTGCGAAAAATGCACTGAATGGTAGGAAATTTGGGGGCAATGTTGTTTCTGCAGTTTATTATCCTGAAGAAAAATACCATAATATGGAGTATGATGTGTAA 1590 0.4472 MSDIDDHASLRGRSSPNKSMSRGSTHEGMRMRKRDGERKSFQDRHHRDYKDGGFMGRGRYDSYDRHHARDNDRHNDRVRNGETKYKYGAHSKRSRRESRSRSRSKSPSRSRSRSESKRTSGFDMAPPAGDVAAAVSGQMPGITQMIQGTSQNLSPFGISQIGALSLMQVQPMTQQATRHARRVYVGGLPPLTNEQAIAAFFSQVMIAIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPSLAAALGPSQPSPHLNLSAVGLAVGAIGGTEGLDRIFVGGLPYYFTEEQIKELLQAFGPLRAFDIVRDKDTGNSKGYGFCTYQDPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKTEQEHVFARAQQHIAMQKIALEVGGLNVPAVERVPTTSDETPTKVLCLTEAVTIDQLRDDEEYEEILEDMRDECCKFGTLVNVVIPRPNHSGELPPGIGKVFLEYSDNAGCFAAKNALNGRKFGGNVVSAVYYPEEKYHNMEYDV* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g0603 529 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 264 IPR000504 GO:0003723
Aev04g0603 529 SUPERFAMILY RNA-binding domain, RBD 302 521 IPR035979 GO:0003676
Aev04g0603 529 Gene3D - 296 397 IPR012677 -
Aev04g0603 529 SUPERFAMILY RNA-binding domain, RBD 94 261 IPR035979 GO:0003676
Aev04g0603 529 SMART rrm1_1 302 375 IPR000504 GO:0003723
Aev04g0603 529 SMART rrm1_1 182 260 IPR000504 GO:0003723
Aev04g0603 529 SMART rrm1_1 435 515 IPR000504 GO:0003723
Aev04g0603 529 MobiDBLite consensus disorder prediction 101 118 - -
Aev04g0603 529 MobiDBLite consensus disorder prediction 1 129 - -
Aev04g0603 529 Gene3D - 423 528 IPR012677 -
Aev04g0603 529 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 1 528 - -
Aev04g0603 529 CDD RRM1_U2AF65 180 262 - -
Aev04g0603 529 PANTHER RNA-BINDING PROTEIN 1 528 - -
Aev04g0603 529 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 20 527 IPR006529 GO:0003723|GO:0005634|GO:0006397
Aev04g0603 529 CDD RRM3_U2AF65 427 515 - -
Aev04g0603 529 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 372 IPR000504 GO:0003723
Aev04g0603 529 CDD RRM2_U2AF65 301 377 - -
Aev04g0603 529 Gene3D - 176 277 IPR012677 -
Aev04g0603 529 MobiDBLite consensus disorder prediction 25 88 - -
Aev04g0603 529 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 379 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g0603 Aev-Chr4 3720241 3725623 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g0603 295 377 Eukaryotic Initiation Factors Gene Family AT1G71770 26.506 1.31e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g0603 K12837 - vvi:100243034 691.419