Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g0586 ATGGCACTTGAGCACTACTTTTCCCAGGAATGGAAGCCCATCTCAAATGCAGTGACAGATACAGAAAACTCAGGCGGCTGTTTCGATTGCAACATCTGCTTAGACTTTGCTCATGAACCAGTAGTGACCCTATGTGGCCACCTCTACTGCTGGCCCTGCATCTACAAATGGCTCCATGTCCAGAGTGATTCTCTTGCACCTGATGAGCCTCCACAATGTCCTGTTTGCAAGGCTGATATATCCCACACTGCAATGGTTCCACTCTATGGGAGAGGCCAAACACAACCTGATGGGAAAGCATCATCATGTTTTGGTGTTTTTGTACCACCAAGACCATCTGCTTCCAGTGCTCAAGCTCTATTTGCATCATCATCTCAAAGTGGTCAGCGACTTCCATACAGAAATCCTTATCAGGGTCAATATTTAGGCCCTCCTATACACCGCGAAGATGATGCTTCACAAATGCTCAATAATCTTGGTGCCACCAACCATCCTTCTCTGGTTGGGATGTTTGGAGAGATGGTTTATGCTAGAGTGTTTGGAAACTCGGAAAACTTGCATGCCTACCCCAATTCTTATCAGCTGATGGGAAGTAATAGTCCTAGATTGAGAAGGCAAGAGATGGAGGCAGATAAGTCATTGAACAGAATCTCAATTTTTCTCTTTTGCTGCTTTCTTCTCTGTCTTATTGTCTTCTGA 699 0.4506 MALEHYFSQEWKPISNAVTDTENSGGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSDSLAPDEPPQCPVCKADISHTAMVPLYGRGQTQPDGKASSCFGVFVPPRPSASSAQALFASSSQSGQRLPYRNPYQGQYLGPPIHREDDASQMLNNLGATNHPSLVGMFGEMVYARVFGNSENLHAYPNSYQLMGSNSPRLRRQEMEADKSLNRISIFLFCCFLLCLIVF* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g0586 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 232 IPR045103 GO:0005783|GO:0006511|GO:0061630
Aev04g0586 232 SMART ring_2 30 76 IPR001841 -
Aev04g0586 232 SUPERFAMILY RING/U-box 27 89 - -
Aev04g0586 232 CDD RING-HC_AtRMA_like 28 78 - -
Aev04g0586 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 232 - -
Aev04g0586 232 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Aev04g0586 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 100 IPR013083 -
Aev04g0586 232 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Aev04g0586 232 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g0586 Aev-Chr4 3652756 3653454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g0586 23 218 C3H Transcription Factor Family AT4G27470 40.952 2.42e-47 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g0586 K10666 - gmx:100816864 335.495