Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g0563 ATGGCATCTTCAGCTTCTGCTGCAACTCTCACTTCTTCACTCTCCTCTCTCTCCCTCCATACTCACACCTCTTCCCGTCTCTCTCTCCTCCCCATTCCCAAATTCACCTTCTCCAACCCCACCCCACTCCGCATTGCCCCTCTCACCGCCACCATCACCAAGGCCAAATCCTCCAACGATGACGACATCGACACTTCCTTCTTCGAAAGCGTGAACCCAGAAGAAGACATCCCTTTCAACCCACCAGCACCCCCAGAAGGCTTCATTGCCCCACCTTCCTTCGACGACGGCCCCATCGAAACCGAAGATGAAATCGCCTCAGCGTACGAGGAGCTGTACGGCCCCGCGTACAGTGGTGTCAGCGTTCTGGGGAATGACGTATACGTGATGGACTCGAAGGTGAAGAAGGAGACAGGGTTTGGGTCGAAGGCGAAGAAGGAGAAGTTGAGGGATGGGTTCGAAGAGAGGGTGGTGCAGGTTCGGAGAGTGACCAAGGTCGTGAAGGGAGGGAAGCAGTTGAGGTTCAGGGCAGTGGTGGTTGTCGGTGACAAGAAGGGACAGGTTGGTGTTGGTGTTGGTAAGGCCAAAGAGGTTATTGCTGCTGTTCAGAAATCTGCTGTTAATGCTCGGAGGAACCTCATCACTGTTCCTATGACCAAGTACTTGACTTTCCCGCACAGAGCTGATGGAGATTATGGGGCAGCAAAGGTAATGCTTAGACCCGCATCTCCGGGTACAGGAGTTATCGCAGGTGGGGCTGTGAGAATTGTTCTAGAGATGGCAGGAGTTGAGAATGCCTTGGGGAAGCAACTAGGGAGTAATAATGCCCTCAACAATGCGAGAGCAACCGTTGTTGCAGTTCAGAAGATGAGGCAGTTCCGTGAGGTCGCTGAGGAGCGTGGGATCCCAATGGAAGAACTATGGAAATGA 930 0.5333 MASSASAATLTSSLSSLSLHTHTSSRLSLLPIPKFTFSNPTPLRIAPLTATITKAKSSNDDDIDTSFFESVNPEEDIPFNPPAPPEGFIAPPSFDDGPIETEDEIASAYEELYGPAYSGVSVLGNDVYVMDSKVKKETGFGSKAKKEKLRDGFEERVVQVRRVTKVVKGGKQLRFRAVVVVGDKKGQVGVGVGKAKEVIAAVQKSAVNARRNLITVPMTKYLTFPHRADGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFREVAEERGIPMEELWK* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g0563 309 Gene3D - 220 308 IPR014721 -
Aev04g0563 309 PANTHER 30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC 10 309 - -
Aev04g0563 309 Pfam Ribosomal protein S5, C-terminal domain 230 300 IPR005324 GO:0003735|GO:0005840|GO:0006412
Aev04g0563 309 SUPERFAMILY Ribosomal protein S5 domain 2-like 223 301 IPR020568 -
Aev04g0563 309 SUPERFAMILY dsRNA-binding domain-like 149 218 - -
Aev04g0563 309 ProSitePatterns Ribosomal protein S5 signature. 170 202 IPR018192 -
Aev04g0563 309 Pfam Ribosomal protein S5, N-terminal domain 153 217 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aev04g0563 309 Hamap 30S ribosomal protein S5 [rpsE]. 130 306 IPR005712 GO:0003735|GO:0006412|GO:0015935
Aev04g0563 309 Gene3D - 143 214 - -
Aev04g0563 309 TIGRFAM rpsE_bact: ribosomal protein uS5 152 306 IPR005712 GO:0003735|GO:0006412|GO:0015935
Aev04g0563 309 ProSiteProfiles S5 double stranded RNA-binding domain profile. 153 216 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aev04g0563 309 PANTHER RIBOSOMAL S SUBUNIT 10 309 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g0563 153 293 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 31.544 4.01e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g0563 K02988 - gmx:100787105 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g0563 04 3505480 3506891 Aev04g0563 04 3505480 3506891 ECH