Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g0558 ATGGATGATAGCTGGGGTGAGGGAAAGAGGGCCCTGAAGTACAAGGTGGTGGAGGAAGACGATGACGATGAGGAGGAGGAGGAGGAGTTCGAGGAGGAAGAAGAGCAAGAGGGGAGTGACGATTACGGAGATGATGGGAGAAAGAAGAGGGTGGTGATGGTGACAGCAGCCGCAGCAGCAGGAAGTAACAACAACAATAATAATAATGTGTGCATCAGCAGCAAGAGAACAACTTGTTCTTCTTCTTCAAAAGGAGCAGGAGCAGGAGGAGGCTCATCATCGTCATCATCATCGTGCTGCCAGGTGGACAGTTGCAATGCTGATCTGAGGAATGCAAAGCAGTACCACAGGCGCCACAAGGTCTGTGAGTACCATGCTAAGGCTTCTTCCGTACTCATCTCTCATCTCCAACAAAGGTTCCATGAACTAGGAGAATTTGATGAGTCAAAAAGGAGTTGTAGAAGACGCTTAGCTGGACATAACGAGAGGCGTCGCAAAAATGCAGCTGACTATCATGGATAA 522 0.4885 MDDSWGEGKRALKYKVVEEDDDDEEEEEEFEEEEEQEGSDDYGDDGRKKRVVMVTAAAAAGSNNNNNNNVCISSKRTTCSSSSKGAGAGGGSSSSSSSCCQVDSCNADLRNAKQYHRRHKVCEYHAKASSVLISHLQQRFHELGEFDESKRSCRRRLAGHNERRRKNAADYHG* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g0558 173 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 25 167 IPR044817 GO:0003677
Aev04g0558 173 MobiDBLite consensus disorder prediction 18 40 - -
Aev04g0558 173 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 25 167 - -
Aev04g0558 173 MobiDBLite consensus disorder prediction 63 98 - -
Aev04g0558 173 ProSiteProfiles Zinc finger SBP-type profile. 97 167 IPR004333 GO:0003677
Aev04g0558 173 Coils Coil 16 36 - -
Aev04g0558 173 MobiDBLite consensus disorder prediction 1 17 - -
Aev04g0558 173 MobiDBLite consensus disorder prediction 1 49 - -
Aev04g0558 173 SUPERFAMILY SBT domain 99 171 IPR036893 GO:0003677|GO:0005634
Aev04g0558 173 Pfam SBP domain 100 166 IPR004333 GO:0003677
Aev04g0558 173 Gene3D - 90 154 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g0558 Aev-Chr4 3467123 3469476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g0558 91 170 SBP-box Gene Family AT2G33810 64.368 1.88e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aev04g0558 SBP 1.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g0558 - - gmx:100782285 141.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g0558 04 3467123 3469476 Aev04g0558 04 3467123 3469476 ECH
Aev04g0558 04 3467123 3469476 Aev03g0113 03 1032877 1035177 ECH
Aev10g1349 10 16985123 16986145 Aev04g0558 04 3467123 3469476 ECH
Aev03g0113 03 1032877 1035177 Aev04g0558 04 3467123 3469476 PCT