Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g0486 ATGGAGGCCATGGTTTACCAATCTTATAACATGGGCTCTTCACCATGTGGGTCTGATATTTATAGGATTTTGAATCCCACCACCACTTTGGATGATAGACTCATCGATGGTGGGTTGGGAATGGCATCACCGGATTCATTGGTTTTGGATAGTGAGAAGGGGGAGCTAGTGAAGTCCCCTGCAGGTGCTAATAAGAAAGGTAAGAAGGTTTCTGAGGCCAAAGCTTTAGCGGCTCTGAAGAATCATAGCGAAGCAGAGAGGAGGAGAAGAGAGAGAATCAATGGTCATCTTGCAACTCTGCGTGGACTTGTGCCTTCCACTGCTAAGATGGATAAAGCCACATTACTGGCTGAAGTTATTAGCCAAGTGAAGGAACTGAAGAAGATTGCAATGGAAGCAAGCAAAGGTTTCCTAATCCCAATGGAAACTGATGAAGTGAAAGTTGAACCATGTGATGATGAAACTGGACATGGATCAATGGCTTACCGGGCATCCGTCTGCTGCGATTACCGGCCGGAGCTACTCTCAGATCTAAAACAAACTTTTGATGCACTTCAGCTACAATTGGTGAGGGCAGAACTATCATCTTTGGGAGACAGAGTTCAGAATGAATTTGTGTACACGTGCTGCTACAAAGGGGGTATTATTGATATTGAGGCATGCCAAATTCTTGCAAGTAATGTTCACAAGGCACTGAGTTCTGTACTTGATAAGGCTTCAACATCATTGGACTACTCGCTAAGACCACCAAGCAAGAGGAGAAGACTATGTTTTACAGATACATCTAATGCCATATGCAACCATGAATGTTGTTCATGTTGA 822 0.4392 MEAMVYQSYNMGSSPCGSDIYRILNPTTTLDDRLIDGGLGMASPDSLVLDSEKGELVKSPAGANKKGKKVSEAKALAALKNHSEAERRRRERINGHLATLRGLVPSTAKMDKATLLAEVISQVKELKKIAMEASKGFLIPMETDEVKVEPCDDETGHGSMAYRASVCCDYRPELLSDLKQTFDALQLQLVRAELSSLGDRVQNEFVYTCCYKGGIIDIEACQILASNVHKALSSVLDKASTSLDYSLRPPSKRRRLCFTDTSNAICNHECCSC* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g0486 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 130 IPR036638 GO:0046983
Aev04g0486 273 PANTHER TRANSCRIPTION FACTOR BHLH30 39 263 IPR045847 GO:0003700|GO:0006355
Aev04g0486 273 Pfam Helix-loop-helix DNA-binding domain 81 126 IPR011598 GO:0046983
Aev04g0486 273 SMART finulus 83 132 IPR011598 GO:0046983
Aev04g0486 273 Coils Coil 175 195 - -
Aev04g0486 273 CDD ACT_UUR-ACR-like 165 206 - -
Aev04g0486 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 126 IPR011598 GO:0046983
Aev04g0486 273 PANTHER DNA BINDING PROTEIN-LIKE 39 263 - -
Aev04g0486 273 Gene3D - 72 135 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g0486 Aev-Chr4 3035803 3037934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g0486 68 261 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.857 3.34e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aev04g0486 HLH 6.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g0486 - - gmx:100804756 327.791