Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g0449 ATGGATCAAGCCGCAAGAGACGGAAAAGGTGAGGTATTGGATCCTGTTCATGAAGGGGTTGATAGGGATTTAAGTCTTTTGGTTGAAGGAGTTGCAACTGATGCAGTAGGTGGGGGTAGCTTGAGTGGCAGAGCTAGTATAAGTGGAGAGTTTGGGACTTCAGAAGATAGGGAAAATGATTTAGGATCAGATAAGGGGGTAAAGGAGGAGGAGCCAGAGGGTGTTGAGGGTGAGGATAAGCTTGATCAACAGAAAACCAGTGATACAATGTATGGGGTTGATCAAGGAACTAGTTATAATTCAAACAATTTGGTTAACCAGGAAGTGCTTGAGACTGTGGTTGTAATAGAGCCTGTTCAGACTGTGTGTGTTAATGGGGACCGTAGGAAATTGGAAGTGAAAGTTGATGAATCAGAGCTGAGCAAAGTATCCATGAAAGCACCGAAAGAGGTGTCCGAAACAGATAGAAATTCTTTTGTGATTGATATAAAGAGCAGCAGCCACAAAGGGTTCAGTGAGAGTTCGGAAGGTGAAAGGATTTGTAGGATTTGCCATCTGGCTTCTGGGCGGCCATCAGATGCAACGGCTCTTGGCACCGCTAATGATGCTACTAGTACAGATTTGATTCAGCTTGGTTGTGCATGTAAAGATGAGCTAGGCATTGCCCACATTCATTGTGCTGAGGCGTGGTTCAAGCTTAAAGGAAACAGAGTATGTGAAATATGTGGCGAGACTGCGAAAAATGTGTCGGGCATTGCTGATATCGGATTCATGGAGGAGTGGAATGAAGGAAGGTTCATGGACAACGATAACTCCTCCCGCAGATTTGGCGGTTGTTGGCGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTTGTAATTGCTTTTGTTCTGCCATGGTTTTTTCGTGTAAATATGTTCTAG 927 0.4455 MDQAARDGKGEVLDPVHEGVDRDLSLLVEGVATDAVGGGSLSGRASISGEFGTSEDRENDLGSDKGVKEEEPEGVEGEDKLDQQKTSDTMYGVDQGTSYNSNNLVNQEVLETVVVIEPVQTVCVNGDRRKLEVKVDESELSKVSMKAPKEVSETDRNSFVIDIKSSSHKGFSESSEGERICRICHLASGRPSDATALGTANDATSTDLIQLGCACKDELGIAHIHCAEAWFKLKGNRVCEICGETAKNVSGIADIGFMEEWNEGRFMDNDNSSRRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g0449 308 SUPERFAMILY RING/U-box 176 245 - -
Aev04g0449 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 253 IPR013083 -
Aev04g0449 308 MobiDBLite consensus disorder prediction 51 85 - -
Aev04g0449 308 MobiDBLite consensus disorder prediction 1 20 - -
Aev04g0449 308 ProSiteProfiles Zinc finger RING-CH-type profile. 173 249 IPR011016 GO:0008270
Aev04g0449 308 Pfam RING-variant domain 181 242 IPR011016 GO:0008270
Aev04g0449 308 MobiDBLite consensus disorder prediction 35 98 - -
Aev04g0449 308 SMART ringv_2 180 243 IPR011016 GO:0008270
Aev04g0449 308 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 308 - -
Aev04g0449 308 PANTHER ZINC FINGER, RING-CH-TYPE 1 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g0449 Aev-Chr4 2821602 2823667 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g0449 175 307 C3H Transcription Factor Family AT5G05830 42.446 2.42e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g0449 - - gmx:100791720 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g0449 04 2821602 2823667 Aev04g0449 04 2821602 2823667 ECH
Aev03g2621 03 26701481 26707053 Aev04g0449 04 2821602 2823667 PCT