Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g0422 ATGGAGATTCCGGTGATGGATGAAGTTCAGGGCAATTCCAGTTCATTGCCTCCTTTTCTCGCTAAGACTTATGAGATGGTGGATGATCCTTCCACCAATTCCATTATTTCATGGAGTGCAACCAACAGGAGTTTCATTGTTTGGGATCCACCTGAGTTTGCAAGGGACTTGTTACCCAGGTTCTTTAAGCACAACAACTTCTCAAGTTTTATCAGACAGCTCAACACTTATGGCTTTAGGAAGATTGATCCAGAGCAATGGGAATTTGCCAATGAAGATTTTGTAAAAGGTCAACAACATCTGTTGAAGAATATCCAGAGACGCAAACCAATTCATAGCCATTCTTCGCAGAATCAACAAGTACATGTACAGGTGCCAAATCCACTAACTGAGGCAGAGCGGAAGACTCTGACAGACAAGATCAAGAAGCTTAATGATGATAAACAACTTCTTCTTCTAGAGTTGCAGAGTCACGAACAGGAGTGGCAAATATTTGGGATAGAAGTAGAAATGTCAAAGGATCAGTTGGGAAAAATGGAAAAAAGGCAACAAATTATGATCTCTTCACTTTCTCAAGCGCTGCATAAACCTGAGATTGTCTTGAATCAATTGACACTGACAGAAAACATGGAGAGAAAACGGAGGATGCGAAGCGATGGTTGCTTTAGTGATGAAGCTAGCATTGAAGAGCCTATGGAAACAAGAGAAAATGTGGAGAATAAGTCTAGCCCTCTTTCCACAGAAAGCATGGACCGGATTAGTCGGCTCCTGGCATCCCTGGTGTTTTGGGAAAATGTTGCACAAGATGTGAATGAAACCCTTGTTCAAAGTCATTCGAACTTGGACTTTGATGAATCTTTGAGTTGTGCAGATAGTCCAGCAATATCTTGTGTGCAACTTGATGTTGAAGTTCAGCCTAAGTCATCTGGAATCGACATGAACACCAAGCCAGCTGTACCTGCTGGTACTGATCTTCTTGCTTCACAAGAACAACCTATGGGAACAAATCCCGTGGCTGCTGGTGTCAATGACAGATTCTGGGAACAATTCTTGACAGAGAATCCTGGTTCAACAGAAATGCAGGAGGCACAGTCAGAAAGAAAGGATGCTGATGGCAGGAAGAATGAAGAAAAACCTTGTGATAATGGCAAATTTTGGTGGAACGTGAGGAATGTGAATAACTTCCCCGAACAGATGTAG 1200 0.4233 MEIPVMDEVQGNSSSLPPFLAKTYEMVDDPSTNSIISWSATNRSFIVWDPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQWEFANEDFVKGQQHLLKNIQRRKPIHSHSSQNQQVHVQVPNPLTEAERKTLTDKIKKLNDDKQLLLLELQSHEQEWQIFGIEVEMSKDQLGKMEKRQQIMISSLSQALHKPEIVLNQLTLTENMERKRRMRSDGCFSDEASIEEPMETRENVENKSSPLSTESMDRISRLLASLVFWENVAQDVNETLVQSHSNLDFDESLSCADSPAISCVQLDVEVQPKSSGIDMNTKPAVPAGTDLLASQEQPMGTNPVAAGVNDRFWEQFLTENPGSTEMQEAQSERKDADGRKNEEKPCDNGKFWWNVRNVNNFPEQM* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g0422 399 PRINTS Heat shock factor (HSF) domain signature 57 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aev04g0422 399 PRINTS Heat shock factor (HSF) domain signature 19 42 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aev04g0422 399 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aev04g0422 399 SUPERFAMILY "Winged helix" DNA-binding domain 14 108 IPR036390 -
Aev04g0422 399 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 6 389 - -
Aev04g0422 399 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 389 IPR027725 -
Aev04g0422 399 SMART hsfneu3 15 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aev04g0422 399 Coils Coil 134 161 - -
Aev04g0422 399 MobiDBLite consensus disorder prediction 353 383 - -
Aev04g0422 399 ProSitePatterns HSF-type DNA-binding domain signature. 58 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aev04g0422 399 MobiDBLite consensus disorder prediction 362 383 - -
Aev04g0422 399 Pfam HSF-type DNA-binding 19 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aev04g0422 399 Gene3D - 11 109 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g0422 Aev-Chr4 2688997 2690309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g0422 12 399 HSF AT4G18880 50.125 1.57e-110 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Aev04g0422 HSF_DNA-bind 2.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g0422 K09419 - gmx:100784280 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g0422 04 2688997 2690309 Aev04g0422 04 2688997 2690309 ECH
Aev03g2648 03 26838453 26839772 Aev04g0422 04 2688997 2690309 PCT