LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev04g0404	ATGGCTTTTCCAAACCAGCAATCCATGTCGGTTTCTCCTCAGAGAAAGATGGGAAGGGGAAAGATTGAGATCAAGAGGATTGAGAACACAACCAATCGCCAAGTTACCTTCTGCAAGCGCAGGAATGGGCTTTTGAAGAAGGCTTATGAGTTATCTGTGCTTTGTGATGCTGAGGTTGCTCTTATAGTCTTCTCTAGCCGTGGCCGTCTCTATGAATATGCTAATAACAGTGTGAAAGCAACTATTGAGAGGTACAAGAAAGCATGTTCAGATTCATCTGGTGCTGGCTCTGCTTCCGAGGCTAATGCTCAGTTTTATCAGCAAGAAGCAGACAAACTGCGTGCGCAAATTAGTAACCTACAGAATAACAACAGGCAAATGATGGGTGAGTCTATAGGCACTATGAATGTCAAGGACCTCAAAGCTCTGGAGTCTAAACTAGAAAAAGGAATTAGCAGGATTCGCTCCAAAAAGAATGAGCTGCTGTTTGCTGAAATTGAGTACATGCAAAAGAGGGAGATAGATTTGCACAACAACAACCAGCTTCTTCGAGCAAAGATAGCTGAAAGTGAGAGGAACCACCATAACAACATGAATAATGTGTTGCCTGCTGGAGGCACAAACTATGACTCTATGCAGTCTCAGCAGCAGTTTGACTCTCGCGGCTACTTCCAAGTCACTGGATTACAACCCAATAATCAGTATGCACGTCAAGACCAGATGTCCCTTCAATTAGTCTAA	741	0.4359	MAFPNQQSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSGAGSASEANAQFYQQEADKLRAQISNLQNNNRQMMGESIGTMNVKDLKALESKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNHHNNMNNVLPAGGTNYDSMQSQQQFDSRGYFQVTGLQPNNQYARQDQMSLQLV*	247

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev04g0404	246	ProSitePatterns	MADS-box domain signature.	19	73	IPR002100	GO:0003677\|GO:0046983
	Aev04g0404	246	ProSiteProfiles	MADS-box domain profile.	17	77	IPR002100	GO:0003677\|GO:0046983
	Aev04g0404	246	SUPERFAMILY	SRF-like	18	89	IPR036879	GO:0003677\|GO:0046983
	Aev04g0404	246	PRINTS	MADS domain signature	39	54	IPR002100	GO:0003677\|GO:0046983
	Aev04g0404	246	PRINTS	MADS domain signature	54	75	IPR002100	GO:0003677\|GO:0046983
	Aev04g0404	246	PRINTS	MADS domain signature	19	39	IPR002100	GO:0003677\|GO:0046983
	Aev04g0404	246	ProSiteProfiles	K-box domain profile.	103	193	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Aev04g0404	246	CDD	MADS_MEF2_like	18	87	IPR033896	GO:0000977\|GO:0045944
	Aev04g0404	246	PANTHER	AGAMOUSB	11	240	-	-
	Aev04g0404	246	Coils	Coil	103	130	-	-
	Aev04g0404	246	Pfam	K-box region	101	187	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Aev04g0404	246	Gene3D	-	29	95	IPR036879	GO:0003677\|GO:0046983
	Aev04g0404	246	SMART	madsneu2	17	76	IPR002100	GO:0003677\|GO:0046983
	Aev04g0404	246	Coils	Coil	140	160	-	-
	Aev04g0404	246	MobiDBLite	consensus disorder prediction	1	21	-	-
	Aev04g0404	246	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	26	73	IPR002100	GO:0003677\|GO:0046983
	Aev04g0404	246	PANTHER	MADS BOX PROTEIN	11	240	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev04g0404	Aev-Chr4	2585054	2591443	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev04g0404	15	246	MADS-box Gene Family	AT3G58780	66.383	2.45e-108	311

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Aev04g0404		K-box	4.8e-28	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev04g0404	K09264		-	gmx:732595	421.394

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev04g0404	04	2585054	2591443	Aev04g0404	04	2585054	2591443	ECH
	Aev03g2659	03	26897957	26901907	Aev04g0404	04	2585054	2591443	PCT