Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g0375 ATGGAGGATCCTACGCTTCATCTCGAGAGAATGGCAACAGAACTCAAATGTCCCATTTGTCTGAGTCTGCTGAATTCCGCATCCTCCCTCACTTGTAACCACGTTTTCTGCAAGTCGTGTATTGGCAAGTCCATGAAATCTGCTTCTGCTTGTCCCGTATGCAAAGTTCCCTTCACCCGTCGAGAGATTCGCCCTGCTCCTCACATGGACAACTTGGTAGCCATTTACAAGAACATGGAACTTGCTTCCGGAATGAGCTTATTTGTCACCCAGAATGTCCCTGCCATCAATTTATCAGATGATGAAATGCAATGTGAAGGTGATGCTGACTGTGTTAAAGAGGATGCTGGTGGGACTCATCAAAATCATGTACAGCAGAGAAAACCCCTTATAAGAAAGGGATCAAGGAAGAATACCATGAACAGCATACAATGCACATCAAAACCTTCTTTTCCAGCAAAGAAAAGGGTTCAGGTGCCACAAAATCCTCTTTCAGAAACTCCGTTAAAGGATGCAACCTCTGGAGACTCTCATACTGGAGTTAATAAGGAGGGAAAAGAAAGGGATTCAGTTGTGGCAAATGAAAGGCCTCTCCGAATTAAAAGCAATGAACCTGTTTATTCACCTTTCTTTTGGTTAAGGGATGTGGACGAAGGTGAAAAATCAACTCAGCAGAGTGACGGCGATGAACTTATTGATGATGGCCCAACACCAATTCCTCCTTCATTCAGTGATCTCAAGGACTCGGATGATGAGAACCCTTCTAAAGAGACTTCAACTGATGAGGTGCAAAAGAAAGCCCCTGTTGATTTATTTGATAGTGAGATGTTTGAATGGACACAAAGGCCTTGCTCCCCTGAATTATTTTTGAGTCCAGTGAAAATGCAGGCTTTGAATACTGGTGAGATTAATGAAAATCAAGAGGATTTAGCAGCTGCTTCTCAAGAGAATGAAATAGATCAGTCTAGAGCTGATGCCAACAGTACTAAATTTCAGACTCCCAAGGAAGGAAACAGACTAACTGATGTGTTGCCACCAAGTGTGACTTCCCTTATTAGGAGTTCTGCTGATATCAATGGGACAAAGAAGTCCTCGAAGAGAGGCAGAAAGACTAGGGGAGAACCAAGGGAAGACCAGATTGTGGAACTACGAGATCAAATTGATGATATGGATGCTGATTCAAATAGATCATCAGAAATCTCTAAGGATCAATCTTGGAACACGCAGAAAAAATCTTCTAATGTGGGGAAGTCTAATAGAAGGGGCAAGAGGGTTTGTTTCAATACCAGTACCAATGCAACACCTCAACCTGATTGTTCAGTCTCCAATATATTATCAGGAGTTCTTATTAATGGTGAAATGAACATGGAAAAGAAGACAAATACTTTGCCTTGTATACAAGAAGAAACAAAGCACGCTCCCCAAGAGATTACTGGAAAATGCCCGAGGAAAAGATCTGGAAAGAAAAAGGTAGATAATGTGCATGACCTAGCTGAAGAGTTATCTGTTAGGCAAAAACTAACAACCAATGAGATTGCTGGTTCTGCATCATCAATTTTTAGTCTGCAGACAGATAACAATGGAAAGGCCAGTAGAAGCAGACAAACAAAAGGCAGAAAATCTATTTCTTGCAATGGAGAATCAAGGAGTACAAAGAAATTGAAGCTTTCCCCTGATTGTATCTCAAAGGCTAAGACTGGTGAAGAAATCCAACCTAATGAAAGTATTCAGACAGGTCCTGATGTTAAGTCTCCAAATGATACATTGAAGGAGAAATATAGTCCTTCGAATGATGAACCCGTTCTACAGAAATGTGAAAGTCATGCCAAAAAGTATGAATGTGCCTTCTGTCTCTCATCAGAAGAATCAGAGGTTTCTGGCCCGATGATGCATTACTACGGCAGCAAGCCTGTAAGTGCAGATTATGAAGGAGGATCCAAAGTCACACATTCTCATAGGAACTGCACTGAATGGGCCCCAAATGTATATTTTGAAGATGATAATGCAGTTAATCTTGAAGCTGAAATAAGTAGAAGTCGTAGAATCAAATGTAGTTTTTGTGGACTTAAGGGTGCTGCACTTGGTTGTTATGAGAAAACTTGTCGCAGGAGCTTTCACGTTCCTTGTGCCAAGTGGACCCCGGAATGTCGTTGGGATATGGAAAATTTCGTCATGCTATGCCCTCTACATGGTTCATCAAAGTTGCCATGTGAAGGTTCAGGATCCCAGTATCGGAGTAAAAAATGCACAGCTAGAGAGGGTAAAAGCCTTGCTCGCAAACATGGCTCTACAAATCAGAGTCATGCTGCTCATGGATCATTCAAGAAAATTGTACTCTGTTGTTCCGCTCTGTCAGTGCAAGAGAGGGATGTTGTTTCTGAATTTGAAAGAGCATCCAAGGTTACTGTTTTGAAAAAATGGGATTCGAGTGTCACCCATGTTATAGCATCAACAGATGAAAATGGGGCATGCAGAAGGACCCTCAAAGTATTGTTGGGCATCCTGGAGGGGAAGTGGATTCTCAACGTTGAATGGATTAAAGCTTGCATGAAGGAAATGGAACCTGTTGAAGAGGAGCATTATGAAATCACTGTTGACATTCATGGAATCAGGGATGGTCCACGTCTTGGACGACTGAGAGTATTGAACAAGCAACGGAAGCTTTTTGATGGCTACAAGTTCTATTTTATGGGAGATTTTATACCATCATACAAGGGCTATCTGCAAGACCTTGTTACTGCTGCTGGAGGCATAATTCTGAATAGGAAACCAGTGTCGGCGGACCGAAAAGCAACATCAGCTGATATGCACCAATGCCAAACCCTCATAGTTTACAGCCTTGAGCTTCCTGATAAATGCAGCCCTGTGAAAGGGGATACTATTTTGAACCAAAGGCGACATGATGCAGAGGTTCTGGCAAGCTCTACGGGTTCAACGGTAGCAACTAATACATGGATTCTGGACTCGATTGCAGCCTGCAAGCTCCAAATCCTAGCTCAATAA 3003 0.4226 MEDPTLHLERMATELKCPICLSLLNSASSLTCNHVFCKSCIGKSMKSASACPVCKVPFTRREIRPAPHMDNLVAIYKNMELASGMSLFVTQNVPAINLSDDEMQCEGDADCVKEDAGGTHQNHVQQRKPLIRKGSRKNTMNSIQCTSKPSFPAKKRVQVPQNPLSETPLKDATSGDSHTGVNKEGKERDSVVANERPLRIKSNEPVYSPFFWLRDVDEGEKSTQQSDGDELIDDGPTPIPPSFSDLKDSDDENPSKETSTDEVQKKAPVDLFDSEMFEWTQRPCSPELFLSPVKMQALNTGEINENQEDLAAASQENEIDQSRADANSTKFQTPKEGNRLTDVLPPSVTSLIRSSADINGTKKSSKRGRKTRGEPREDQIVELRDQIDDMDADSNRSSEISKDQSWNTQKKSSNVGKSNRRGKRVCFNTSTNATPQPDCSVSNILSGVLINGEMNMEKKTNTLPCIQEETKHAPQEITGKCPRKRSGKKKVDNVHDLAEELSVRQKLTTNEIAGSASSIFSLQTDNNGKASRSRQTKGRKSISCNGESRSTKKLKLSPDCISKAKTGEEIQPNESIQTGPDVKSPNDTLKEKYSPSNDEPVLQKCESHAKKYECAFCLSSEESEVSGPMMHYYGSKPVSADYEGGSKVTHSHRNCTEWAPNVYFEDDNAVNLEAEISRSRRIKCSFCGLKGAALGCYEKTCRRSFHVPCAKWTPECRWDMENFVMLCPLHGSSKLPCEGSGSQYRSKKCTAREGKSLARKHGSTNQSHAAHGSFKKIVLCCSALSVQERDVVSEFERASKVTVLKKWDSSVTHVIASTDENGACRRTLKVLLGILEGKWILNVEWIKACMKEMEPVEEEHYEITVDIHGIRDGPRLGRLRVLNKQRKLFDGYKFYFMGDFIPSYKGYLQDLVTAAGGIILNRKPVSADRKATSADMHQCQTLIVYSLELPDKCSPVKGDTILNQRRHDAEVLASSTGSTVATNTWILDSIAACKLQILAQ* 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g0375 1000 ProSiteProfiles Extended PHD (ePHD) domain profile. 611 731 IPR034732 -
Aev04g0375 1000 SMART PHD_3 683 731 IPR001965 -
Aev04g0375 1000 SMART BRCT_7 886 993 IPR001357 -
Aev04g0375 1000 SMART BRCT_7 771 853 IPR001357 -
Aev04g0375 1000 Pfam PHD-like zinc-binding domain 652 730 - -
Aev04g0375 1000 Gene3D BRCT domain 886 993 IPR036420 -
Aev04g0375 1000 MobiDBLite consensus disorder prediction 245 268 - -
Aev04g0375 1000 MobiDBLite consensus disorder prediction 568 584 - -
Aev04g0375 1000 MobiDBLite consensus disorder prediction 522 600 - -
Aev04g0375 1000 MobiDBLite consensus disorder prediction 160 179 - -
Aev04g0375 1000 MobiDBLite consensus disorder prediction 522 551 - -
Aev04g0375 1000 CDD BRCT_Bard1_rpt1 777 856 - -
Aev04g0375 1000 MobiDBLite consensus disorder prediction 135 151 - -
Aev04g0375 1000 ProSiteProfiles BRCT domain profile. 884 1000 IPR001357 -
Aev04g0375 1000 ProSiteProfiles BRCT domain profile. 769 863 IPR001357 -
Aev04g0375 1000 MobiDBLite consensus disorder prediction 218 268 - -
Aev04g0375 1000 ProSiteProfiles Zinc finger RING-type profile. 17 55 IPR001841 -
Aev04g0375 1000 SUPERFAMILY BRCT domain 777 874 IPR036420 -
Aev04g0375 1000 MobiDBLite consensus disorder prediction 343 359 - -
Aev04g0375 1000 SUPERFAMILY BRCT domain 888 996 IPR036420 -
Aev04g0375 1000 MobiDBLite consensus disorder prediction 312 336 - -
Aev04g0375 1000 SUPERFAMILY RING/U-box 7 78 - -
Aev04g0375 1000 MobiDBLite consensus disorder prediction 180 195 - -
Aev04g0375 1000 MobiDBLite consensus disorder prediction 360 398 - -
Aev04g0375 1000 MobiDBLite consensus disorder prediction 399 415 - -
Aev04g0375 1000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 608 733 IPR013083 -
Aev04g0375 1000 Pfam BRCA1 C Terminus (BRCT) domain 774 850 IPR001357 -
Aev04g0375 1000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Aev04g0375 1000 SMART ring_2 684 730 IPR001841 -
Aev04g0375 1000 SMART ring_2 17 54 IPR001841 -
Aev04g0375 1000 PIRSF BRCA1 1 360 IPR031099 GO:0006281|GO:0006974
Aev04g0375 1000 PIRSF BRCA1 452 722 IPR031099 GO:0006281|GO:0006974
Aev04g0375 1000 PIRSF BRCA1 717 1000 IPR031099 GO:0006281|GO:0006974
Aev04g0375 1000 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN 3 997 - -
Aev04g0375 1000 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 3 997 IPR031099 GO:0006281|GO:0006974
Aev04g0375 1000 ProSitePatterns Zinc finger RING-type signature. 32 41 IPR017907 -
Aev04g0375 1000 MobiDBLite consensus disorder prediction 116 197 - -
Aev04g0375 1000 CDD ePHD 614 730 - -
Aev04g0375 1000 MobiDBLite consensus disorder prediction 312 432 - -
Aev04g0375 1000 Pfam Zinc finger, C3HC4 type (RING finger) 16 54 - -
Aev04g0375 1000 Gene3D BRCT domain 774 879 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g0375 Aev-Chr4 2397517 2402209 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g0375 14 63 C3H Transcription Factor Family AT3G07200 34.000 8.03e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g0375 K10683 - gmx:100804958 1312.75