Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g0334 ATGCTACATCAACCGGCTGCACCGGTCACTGTGTTTCCTGTGCTGACAAGCACAATTATGACCCCGTGGACTGTTCTCCGCACACATATCGCCGAGTCACGACCTCGTTCGTCGCGCTCGTACCATCCCCACTGCATCTTCACCGTTGGCTCCGTTGTCCATATCAGATCTGAGCCGTTGGAATTTCTTACTTTCTTCACCGTCGAATCTCCGCCACAGGTCCTCTCACGCGCCCGTGGAGAGCGTGTGATCTACTCTTGTCGTGGGGCACAAGCAAATTTGTCTTGCTTTTCAGCGCCGGTTTATTTTCCTTCCTCCGTCGCAATGGAGCGGTTCGGCCGGTCCAGTGAGGGTTCACGGTCTGATCTGTCGCCGGAGTGGACCGGAACCGGTGCCGAAACTGGCCTCGAAGAGCGTGTGTGGCAATTGGGGTTGGGTGCTGCAGAGGAATCGTATCCCCAAAGGCCCGATGAAGCTGATTGTATCTACTATTTGAGGACTGGATTCTGTGGCTATGGCCCTCGCTGTCGCTTCAACCATCCCAAAGACCGTGCTGCGGTTATTGGAGCTGCAAGGACTGTAGGGGAGTATCCGGAACGTGTTGGCCAGCCTCCATGCCAGTATTACATGAAGACTGGATCGTGCAAATTCGGCGCGTCTTGCAAGTACCACCATCCTAGGCAGGCAGGAGGCACTGCTACCCCTGTGTCACTAAATTGTTATGGATATCCATTGCGACCGGGTGAGAAAGAGTGTTCATATTATGTGAAGACGGGGCAATGCAAGTTTGGTTCAACTTGTAAATTCCATCATCCACAGCCTGCTGGCTTCCAGGTCCCGGCGGCATCACCGGTTCCTCCAGTTTCACCTTTATCTGTACCAGTACCTTCACCAATGTATCCAACCGTACAGACTCCATCTGGTCCTCCATCTCAACAGATTGGTGTACTGGTTGCTAGGCCACCTATGCTACCTGGTTCATTTGTCCAGGGCCCCTACGGGCCTGTGGTACTATCCCCTACCATGGTCCCAATTTCTGGATGGGGTCCATATCAGTCTCCTGCAGCAAGCCCTGTACTTCCTTCTAATACTCCATCTAATGTTGGGCCGGCACAGCTTTATGGAATAACCCAGATACCTTCACAAGCAGCTGCCTATACTGGACCTTATCAACCTTCAGGTTCTTCTGTTGGTCCTTCAGGTAGTAGTCAGAAAGAGCAATCATTGCCGGAAAGGCCTGATCAGCCAGAATGTCAGCATTACTTGAAAACAGGAGAGTGCAAATTTGGTTCATCATGTAGGTACCACCATCCACCAGACATGAGTGCACCAAAAGGGAATGTGATCCTTAGTCCTGCTGGCCTTCCTCTGCGCCCGGGGGTGCCGCTTTGCACTCATTATGCACAGCGTGGAGTATGTAAGTTCGGTTCTGCATGCAGATTTGATCATCCTATGGTATCACTGAGCTATAGTCCATCTGCTTCTTCCCTCGCTGACATGCCGGTTGCACCCTATCCTGTTGGTTCATCAATTGGTACACTCGCTCCGTCATCTTCATCATCAGAGTTGCGGCCAGAGCTCACCTCGGGATCAAATAAGGAGTCTGCTTCATCCAGATTGCCTTCATCAGTGAGCACATTGACTGGATCCGTTGGCTTGACTTTGTCAACTGGTGGACCTGTTTCCCAAACAAGCACCCAACCATCAGCTCAGAGTTCCAGTTCTTCAGCAGCTGCCGATGCCGCCGCAACCAGCAGCGTCTCTCACACGTCAAGCTAA 1779 0.5216 MLHQPAAPVTVFPVLTSTIMTPWTVLRTHIAESRPRSSRSYHPHCIFTVGSVVHIRSEPLEFLTFFTVESPPQVLSRARGERVIYSCRGAQANLSCFSAPVYFPSSVAMERFGRSSEGSRSDLSPEWTGTGAETGLEERVWQLGLGAAEESYPQRPDEADCIYYLRTGFCGYGPRCRFNHPKDRAAVIGAARTVGEYPERVGQPPCQYYMKTGSCKFGASCKYHHPRQAGGTATPVSLNCYGYPLRPGEKECSYYVKTGQCKFGSTCKFHHPQPAGFQVPAASPVPPVSPLSVPVPSPMYPTVQTPSGPPSQQIGVLVARPPMLPGSFVQGPYGPVVLSPTMVPISGWGPYQSPAASPVLPSNTPSNVGPAQLYGITQIPSQAAAYTGPYQPSGSSVGPSGSSQKEQSLPERPDQPECQHYLKTGECKFGSSCRYHHPPDMSAPKGNVILSPAGLPLRPGVPLCTHYAQRGVCKFGSACRFDHPMVSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELTSGSNKESASSRLPSSVSTLTGSVGLTLSTGGPVSQTSTQPSAQSSSSSAAADAAATSSVSHTSS* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g0334 592 Gene3D - 407 498 - -
Aev04g0334 592 Gene3D - 153 232 - -
Aev04g0334 592 SMART c3hfinal6 412 439 IPR000571 GO:0046872
Aev04g0334 592 SMART c3hfinal6 458 485 IPR000571 GO:0046872
Aev04g0334 592 SMART c3hfinal6 155 182 IPR000571 GO:0046872
Aev04g0334 592 SMART c3hfinal6 200 227 IPR000571 GO:0046872
Aev04g0334 592 SMART c3hfinal6 246 273 IPR000571 GO:0046872
Aev04g0334 592 ProSiteProfiles Zinc finger C3H1-type profile. 458 486 IPR000571 GO:0046872
Aev04g0334 592 ProSiteProfiles Zinc finger C3H1-type profile. 412 440 IPR000571 GO:0046872
Aev04g0334 592 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 157 182 IPR000571 GO:0046872
Aev04g0334 592 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 460 485 IPR000571 GO:0046872
Aev04g0334 592 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 414 439 IPR000571 GO:0046872
Aev04g0334 592 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 248 273 IPR000571 GO:0046872
Aev04g0334 592 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 203 227 IPR000571 GO:0046872
Aev04g0334 592 SUPERFAMILY CCCH zinc finger 203 228 IPR036855 GO:0046872
Aev04g0334 592 ProSiteProfiles Zinc finger C3H1-type profile. 246 274 IPR000571 GO:0046872
Aev04g0334 592 ProSiteProfiles Zinc finger C3H1-type profile. 200 228 IPR000571 GO:0046872
Aev04g0334 592 MobiDBLite consensus disorder prediction 514 592 - -
Aev04g0334 592 SUPERFAMILY CCCH zinc finger 157 184 IPR036855 GO:0046872
Aev04g0334 592 Gene3D - 233 279 - -
Aev04g0334 592 MobiDBLite consensus disorder prediction 385 409 - -
Aev04g0334 592 SUPERFAMILY CCCH zinc finger 248 274 IPR036855 GO:0046872
Aev04g0334 592 MobiDBLite consensus disorder prediction 385 417 - -
Aev04g0334 592 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 109 578 - -
Aev04g0334 592 PANTHER PROTEIN PHOSPHATASE RELATED 109 578 - -
Aev04g0334 592 SUPERFAMILY CCCH zinc finger 416 440 IPR036855 GO:0046872
Aev04g0334 592 ProSiteProfiles Zinc finger C3H1-type profile. 155 183 IPR000571 GO:0046872
Aev04g0334 592 SUPERFAMILY CCCH zinc finger 461 485 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g0334 Aev-Chr4 2099006 2108603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g0334 109 551 C2H2 Transcription Factor Family AT5G18550 55.195 2.74e-150 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aev04g0334 zf-CCCH 7.6e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g0334 - - gmx:100789405 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g2969 01 31451337 31454995 Aev04g0334 04 2099006 2108603 PCT