Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g0326 ATGGCGAGGCCTTCGAAGCCACCGGTATCTTCCGACGAAGCTCTCTCCAATGGTTCCACCTCCGAGGAGGAGGAGGAGCAGGTCAACCAGCAGATCAACGAGGAAGAGGATGAGGAGGAGCTCGAGGCGGTGGCGCGTCCAGCTAGCTCTGACGACGATGACGAAGCTGCCGACGGTAATCCGCCGGACTCCGACGAAGACACCGCCGCTGCCGAAGACGCCGATGAGGATGAGGAGGGCGGAGAAAATGTTAATCCGGCAGTTAGCAAGCGTGAGAAGGCTAGATTGAGAGAGATGCAGAAAATGAAGAAACAGAAGATTCAGGAGATATTGGATGCGCAGAATGCAGCTATTGATGCTGACATGAACAATAGAGGTAAAGGGAGGCTGAAGTATCTCCTACAGCAGACTGAGCTGTTTGCTCATTTTGCGAAAGGTGATCAATCTTCATCCCAGAAGTCAAGGGGAAGGGGTCGCCATGCATCAAAAGTGACTGAAGAAGAGGAAGATGAAGAATACCTAAAAGAAGAAGAAGATGGTCTGTCAAACACTCGTTTGGTGACACAACCTTCTTGTATTCAAGGGAAGCTGAGAGATTACCAACTTGCTGGGCTAAACTGGCTCATAAGATTGTACGAGAATGGAATAAATGGAATTCTCGCTGATGAAATGGGACTTGGTAAAACATTACAAACTATATCTTTATTGGCCTATTTGCATGAGTTCAGAGGAATTAAAGGTCCTCATATGGTAGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTCTGTCCTGTTCTGCGTGCAATAAAGTTCCTTGGCAACCCAGAGGAAAGGAGACATATAAGGGAGGAATTATTGGTTGCTGGAAAGTTTGATGTTTGTGTTACAAGTTTTGAAATGGCGATCAAGGAGAAGTCTGCTTTGCGTCGATTTAGTTGGCGCTACATCATTATTGATGAAGCACATCGAATCAAGAATGAAAATTCCCTCCTGTCCAAAACAATGAGGCTCTACAATACAAATTATCGCCTCCTTATTACTGGAACACCGCTTCAGAACAATCTCCATGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACTTTTGATGAGTGGTTTCAAATCTCTGGTGAGAATGACCAACAGGAGGTTGTCCAACAATTACACAAGGTCCTCCGACCATTTCTCCTTCGGAGATTGAAGTCAGATGTAGAGAAAGGGTTGCCACCAAAAAAGGAAACCATTCTTAAAGTAGGCATGTCACAGATGCAGAAACAGTATTATAAAGCACTTCTGCAAAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAGCGGAAGCGCCTCCTGAATATAGCTATGCAACTACGTAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCATATACAACAGGAGATCATCTTATTACTAATGCTGGTAAAATGGTTCTTCTGGATAAGTTACTTCCTAAATTGAAAGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTAATGTTTCGTGGGTATCAGTATTGCCGCATTGATGGAAATACTGGGGGAGATGAACGTGATGCTTCCATTGATGCTTTCAACAAACCTGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGGGCTGGAGGTCTTGGTATTAATCTTGCTACTGCTGATGTCGTCATTCTGTATGATAGTGACTGGAATCCACAAGTGGACTTGCAGGCTCAGGATCGTGCTCATAGGATAGGTCAGAAGAAAGAAGTTCAAGTTTTCAGGTTTTGCACTGAGTATACAATTGAGGAGAAAGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGACGGTTGGCTGAGCAGAAGACGGTAAATAAAGACGAGTTGCTTCAAATGGTTAGGTTTGGGGCTGAAATGGTTTTCAGTTCCAAAGATAGTACAATTACAGATGAGGATATTGATAGAATCATTGCAAAAGGAGAGGAGGCTACTGCTGAACTTGATGCCAAGATGAAGAAATTTACTGAGGATGCAATCAAATTTAAGATGGATGACACTGCTGAGCTATATGATTTTGATGATGACAAGGATGAGAACAAATTTGATTTCAAGAAAATTGTGAGTGAAAACTGGATTGAACCACCAAAAAGAGAGCGGAAGCGCAATTACTCAGAGTCTGAATACTTCAAGCAAACATTGCGACAAGGTGGTCCTTCTAAACCAAAAGAGCCACGAATTCCTAGGATGCCACAGTTGCATGATTTCCAGTTTTTCAACACACACAGGCTGAGCGAGCTGTATGAAAAGGAAGTACGCTATCTAATGCAAACACATCAGAAGAATCAGATAAAGGACTCAATAGATGTTGATGAATCGGAAGAGGTTGGAGATCCATTGACTGCTGAAGAGTTGGAAGAAAAGGAACGGCTGCTAGAGGAGGGATTCTCTTCATGGAGCCGGAGGGATTTTAATACTTTCATTAGGGCCTGTGAAAAGTATGGCCGAAATGATATAGAAGGTATTGCTTCTGACATGGAAGGAAAAACTGAGGAGGAAGTTGAAAGATATGCAAATGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATTAAAAACATTGAGAGGGGTGAGGCTAGAATCTCACGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCATGGCTAGAGTTGAAGATACAGTATGGGCAAAACAAAGGGAAGTTATACAATGAAGAATGTGACAGATTCATGATATGCATGGTTCACAAGCTCGGGTATGGGAACTGGGATGAGTTGAAGGCAGCATTTCGAACATCTCCCTTGTTTCGTTTTGATTGGTTTGTCAAGTCTCGCACAACGCAGGAACTTGCAAGGAGGTGTGACACCCTCATTCGCCTGGTTGAGAAGGAAAACCAAGAATATGACGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCAAAGAGCTTGACCCCATCAAAGCGTGCCTTAGCAAGACAGACAGAGTCTCCATCTTCTTTGAAGAAACGCAAGCAGTTAACTATGGACGATTATGGAAGCTCGGGGAAAAGGAGAAAAGGAACGTGA 3225 0.4304 MARPSKPPVSSDEALSNGSTSEEEEEQVNQQINEEEDEEELEAVARPASSDDDDEAADGNPPDSDEDTAAAEDADEDEEGGENVNPAVSKREKARLREMQKMKKQKIQEILDAQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKSRGRGRHASKVTEEEEDEEYLKEEEDGLSNTRLVTQPSCIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPEERRHIREELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDERDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDDKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTLRQGGPSKPKEPRIPRMPQLHDFQFFNTHRLSELYEKEVRYLMQTHQKNQIKDSIDVDESEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIEGIASDMEGKTEEEVERYANVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSLTPSKRALARQTESPSSLKKRKQLTMDDYGSSGKRRKGT* 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g0326 1074 CDD SF2_C_SNF 498 623 - -
Aev04g0326 1074 Gene3D - 198 413 IPR038718 -
Aev04g0326 1074 MobiDBLite consensus disorder prediction 83 101 - -
Aev04g0326 1074 Gene3D - 936 1038 - -
Aev04g0326 1074 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 9 1072 - -
Aev04g0326 1074 Coils Coil 1005 1032 - -
Aev04g0326 1074 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 502 653 IPR001650 -
Aev04g0326 1074 MobiDBLite consensus disorder prediction 1 101 - -
Aev04g0326 1074 SUPERFAMILY Homeodomain-like 851 901 IPR009057 -
Aev04g0326 1074 CDD DEXHc_SMARCA1_SMARCA5 194 414 IPR044754 GO:0005524
Aev04g0326 1074 Pfam SNF2-related domain 210 477 IPR000330 GO:0005524|GO:0140658
Aev04g0326 1074 MobiDBLite consensus disorder prediction 144 181 - -
Aev04g0326 1074 ProSiteProfiles SANT domain profile. 847 899 IPR017884 -
Aev04g0326 1074 SMART sant 848 897 IPR001005 -
Aev04g0326 1074 SMART sant 950 1011 IPR001005 -
Aev04g0326 1074 CDD SANT 851 895 IPR001005 -
Aev04g0326 1074 Gene3D ISWI, HAND domain 749 847 IPR036306 GO:0003677|GO:0006338|GO:0031491
Aev04g0326 1074 SUPERFAMILY Homeodomain-like 903 1025 IPR009057 -
Aev04g0326 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 695 IPR027417 -
Aev04g0326 1074 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 209 374 IPR014001 -
Aev04g0326 1074 Gene3D - 418 710 IPR027417 -
Aev04g0326 1074 MobiDBLite consensus disorder prediction 1050 1074 - -
Aev04g0326 1074 MobiDBLite consensus disorder prediction 1021 1074 - -
Aev04g0326 1074 Gene3D - 848 902 - -
Aev04g0326 1074 Gene3D iswi atpase 903 935 - -
Aev04g0326 1074 SMART ultradead3 193 385 IPR014001 -
Aev04g0326 1074 Pfam SLIDE 905 1015 IPR015195 GO:0003677|GO:0005634|GO:0006338
Aev04g0326 1074 Coils Coil 18 42 - -
Aev04g0326 1074 MobiDBLite consensus disorder prediction 750 781 - -
Aev04g0326 1074 MobiDBLite consensus disorder prediction 10 26 - -
Aev04g0326 1074 MobiDBLite consensus disorder prediction 1021 1036 - -
Aev04g0326 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 412 IPR027417 -
Aev04g0326 1074 SMART helicmild6 528 612 IPR001650 -
Aev04g0326 1074 MobiDBLite consensus disorder prediction 54 82 - -
Aev04g0326 1074 MobiDBLite consensus disorder prediction 27 42 - -
Aev04g0326 1074 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 760 850 IPR036306 GO:0003677|GO:0006338|GO:0031491
Aev04g0326 1074 Coils Coil 89 116 - -
Aev04g0326 1074 Pfam Helicase conserved C-terminal domain 500 612 IPR001650 -
Aev04g0326 1074 PANTHER SNF2/RAD54 HELICASE FAMILY 9 1072 - -
Aev04g0326 1074 Pfam HAND 761 843 IPR015194 GO:0003677|GO:0006338|GO:0031491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g0326 Aev-Chr4 2021112 2028626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g0326 189 639 RAD5 or RAD16-like Gene Family AT1G02670 27.103 1.32e-42 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aev04g0326 SNF2_N 1.7e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g0326 K11654 - gmx:100782649 1927.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g2978 01 31499900 31506726 Aev04g0326 04 2021112 2028626 PCT