Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g0314 ATGCCAACAATGATAAGAAGCATAATCCAAGACATGAGGTCTCGCTCCCACCGCGTCGTGCAAGACGACACTCCCGATGTTGTCGTTACTGCCATCGACGACGAAGGTGAAGACGCCGCCATGAGGCAGAGCTGCTGGGCCCACATGCCTCAGGAGCTCCTCAGGGAGGTTCTCGTCAGGATCGAGTCGTCGGAGGCCACGTGGCCGCCGCGGAAGAGCGTGGTGGCATGCGCCGGAGTGTGCCGGAGCTGGAGGCACATCACCAAGGACATCGTTAAAACCCCTGAACTCTCCGCAAAGATCACGTTCCCAATTTCCGTTAAGCAGCCTGGTCCAAGGGAGCATCTCCTCCAGTGCTTTATAAAGCGCAACCGGACCACGCAGACGTATTATTTGTATCTGAGTTTAACTAGTACGCTAACGGATGATGGGAAGTTCCTCCTGGCTGCAAGGAAGTGCAGACGTCCCACCTGCACAGATTACATCATCTCTTTAAATGCAGATGATATGTCAAAGGGAAGCAACACCTATATTGGGAAATTGAGATCAAATTTTCTGGGAACCAAGTTCACAATCTATGATGGCCAACCACCTCATGCTGGGGCAAAGATTGCAAAAAGTCGCTCCACTAGACTCGTGAATCTAAAACAAGTAGCCCCCAAGGTTCCTACAGGCAACTATCCTGTGGCTCACATATCATATGAGTTGAATGTGTTAGGCTCGAGGGGGCCTAGGAGAATGCATTGCGTTATGGATTCCATACCTGCCTCTGCAATTGAACCAGGAGGGGTAGCCCCGACACAGACTGAATTTTCCCTTAGCAACATAGATATGTTCCCCACATTCCCCTTTTTCCGATCAAAATCAAATCGTGTAGAAAACTCCCTATCCGGACCCCTCGGTGATCAAAAGGATGGGGTGCTAGTGTTGAAAAACAAGGCTCCCAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTAAACTTCCATGGACGGGTGACAATTGCCTCTGTTAAAAACTTTCAGCTTGTAGCTTCCCCAGAAAATGGACCTGCCGGACCAGAACATGATAAGATCATACTCCAATTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGATACCCCATCTCTGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCATGTGAATGA 1197 0.4946 MPTMIRSIIQDMRSRSHRVVQDDTPDVVVTAIDDEGEDAAMRQSCWAHMPQELLREVLVRIESSEATWPPRKSVVACAGVCRSWRHITKDIVKTPELSAKITFPISVKQPGPREHLLQCFIKRNRTTQTYYLYLSLTSTLTDDGKFLLAARKCRRPTCTDYIISLNADDMSKGSNTYIGKLRSNFLGTKFTIYDGQPPHAGAKIAKSRSTRLVNLKQVAPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPASAIEPGGVAPTQTEFSLSNIDMFPTFPFFRSKSNRVENSLSGPLGDQKDGVLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g0314 398 PRINTS Tubby superfamily signature 226 253 IPR000007 -
Aev04g0314 398 PRINTS Tubby superfamily signature 310 327 IPR000007 -
Aev04g0314 398 PRINTS Tubby superfamily signature 376 398 IPR000007 -
Aev04g0314 398 PRINTS Tubby superfamily signature 177 201 IPR000007 -
Aev04g0314 398 PRINTS Tubby superfamily signature 328 344 IPR000007 -
Aev04g0314 398 PRINTS Tubby superfamily signature 161 177 IPR000007 -
Aev04g0314 398 PRINTS Tubby superfamily signature 355 374 IPR000007 -
Aev04g0314 398 Gene3D - 40 97 - -
Aev04g0314 398 SUPERFAMILY Tubby C-terminal domain-like 95 398 IPR025659 -
Aev04g0314 398 SUPERFAMILY F-box domain 41 90 IPR036047 GO:0005515
Aev04g0314 398 PANTHER TUBBY-RELATED 5 398 - -
Aev04g0314 398 ProSitePatterns Tub family signature 1. 328 341 IPR018066 -
Aev04g0314 398 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 5 398 - -
Aev04g0314 398 ProSitePatterns Tub family signature 2. 383 398 IPR018066 -
Aev04g0314 398 Pfam F-box domain 46 93 IPR001810 GO:0005515
Aev04g0314 398 Gene3D Tubby Protein; Chain A 103 398 IPR025659 -
Aev04g0314 398 Pfam Tub family 107 393 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g0314 Aev-Chr4 1953384 1956512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g0314 13 398 TUB Transcription Factor Family AT2G47900 72.494 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aev04g0314 Tub 8.3e-114 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g0314 K19600 - gmx:100778346 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g0314 04 1953384 1956512 Aev04g0314 04 1953384 1956512 ECH