Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g0236 ATGGGTATTTCCTGGAGCAGCAGCAGCAGAAGAAGAAACAGCTTCATTCAAAACCCACCACCACCACCACCGCTTCCACCCCCTTATTACTACCCTCCACCATCTCAACCTCCACCTCCACCTCCTCCGCCGCAAGGCTACTTCTTTCCCTCCGCAACCACCACCACCCCTTACACCCCACAGCAACCACCACCGCTACCGCCTCAGACCCATTCCTTCTACTACTCCAACAATGGGTACACCAATTCTGTGGTTGGGGGCCGCCTTCACTACCAACCTTTCTACCTGAATCAGCCTCTTCCTCTCCCTCCTCCTCCTGTTCCTATCTCTTCCCCACCTCCCTATGTCGACCATCAAACTGCTAAGAAGATCAGGAACTACGTCAATGTTCACAAGGACACCTTGAAGCTCGAGATTGATGACCACAACCCCGATCACCACCTCCTTTCCTTCGTTTTCGATGCTGTCTATGATGGCAGCATTACAATATACTACTTTGCCAAGGAAGAAGAAAAATGTAGGTTTGTTCCACTATTTCCTGATGCATTTGGGCCACTAAGAATCCCCTTTCAGAAAGGAGTTGGCCAGAAGTTTTCTCAGCCTTCAGGAACAGGGGTTGACCTAGGCTTCTTTGCATTGGATGATCTTTCGAAACCCTCACCCGGAGAAGATGTCTTTCCTCTTGTTATATGTGCTGAAACATCTTTGGCAACTCCCTCATCGGATGAAACCCCTGATGATTCCATGCTAGATGCATCGCCTCACATGCAAATAACTCAAGGTGTCTTAGAGAAAAACAATAATGGTGGTGATCATTTCCAGATAAAAGTAGTTAGGCAGATTTTGTGGATTGACGGCGTTCGTTATGAGTTAAGGGAATTATATGGAATAGGAAGCTCAGAGGCAACAGATTTTGATGACGGTGATACCGGGAAGGAGTGTGTAATATGCATGACTGAACCAAAGGACACTGCTGTCTTACCTTGTCGACACATGTGTTTGTGCAGCGAGTGCGCAAAAGCTTTGCGGCTGCAGTCCAATAAATGCCCAATATGCCGTCAATCTATTGAGGAACTTATTGAGATCAAGATTAACAATGCCGAAAATTGA 1110 0.4721 MGISWSSSSRRRNSFIQNPPPPPPLPPPYYYPPPSQPPPPPPPPQGYFFPSATTTTPYTPQQPPPLPPQTHSFYYSNNGYTNSVVGGRLHYQPFYLNQPLPLPPPPVPISSPPPYVDHQTAKKIRNYVNVHKDTLKLEIDDHNPDHHLLSFVFDAVYDGSITIYYFAKEEEKCRFVPLFPDAFGPLRIPFQKGVGQKFSQPSGTGVDLGFFALDDLSKPSPGEDVFPLVICAETSLATPSSDETPDDSMLDASPHMQITQGVLEKNNNGGDHFQIKVVRQILWIDGVRYELRELYGIGSSEATDFDDGDTGKECVICMTEPKDTAVLPCRHMCLCSECAKALRLQSNKCPICRQSIEELIEIKINNAEN* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g0236 369 Pfam Zinc finger, C3HC4 type (RING finger) 312 358 - -
Aev04g0236 369 MobiDBLite consensus disorder prediction 1 73 - -
Aev04g0236 369 MobiDBLite consensus disorder prediction 16 48 - -
Aev04g0236 369 PANTHER MAHOGUNIN 1 368 IPR045194 GO:0061630
Aev04g0236 369 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 313 353 IPR045195 -
Aev04g0236 369 MobiDBLite consensus disorder prediction 1 15 - -
Aev04g0236 369 SUPERFAMILY RING/U-box 313 359 - -
Aev04g0236 369 SMART ring_2 314 352 IPR001841 -
Aev04g0236 369 ProSiteProfiles Zinc finger RING-type profile. 314 353 IPR001841 -
Aev04g0236 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 1 368 - -
Aev04g0236 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 363 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g0236 Aev-Chr4 1441687 1444940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g0236 115 368 C3H Transcription Factor Family AT3G06140 62.353 2.51e-110 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g0236 - - gmx:100786054 513.842