Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g0203 ATGATGCAGCCACGACCTGGAGTGCCTCCACCCAACATGGGGCAGCAGCCACCGCAGCAACAGTACCCGCCGCAGCAGCAGCCCCCGTACATGATGATGCCGCCGCAGCCCCAGGCTCCGCCGCAGATGTGGGCCCCCTCCGCCCAGGCGCCGCAGCAGCAGGTGGCTGCGCCCCAACAGCCTGCTCAGCCCGCTAGCGCCGACGAAGTGAGGACACTCTGGATCGGCGACTTGCAGTACTGGATGGACGAGAACTACCTCTACACCTGCTTCGCTCATACCGGCGAGGTGACCTCTATGAAGGTTATTCGGAACAAGCAAACTGGTCAGTCTGAGGGCTACGGTTTTATCGAGTTCAGTAGCCGTCCTGGTGCTGAGAGAGTCCTCCAGACATACAATGGAACAATTATGCCGAATGGTGGGCAGAGCTTCAGATTGAACTGGGCTACCTTTAGTGCTGGTGAGAGGCGCCATGATGATAGCCCTGATTACACCATATTTGTTGGTGACTTGGCTGCGGATGTTACTGATTACCTCCTTCAGGAAACATTTAGGTCTCGCTATAACTCTGTAAAAGGGGCAAAAGTTGTGATTGATAGGCTCACTAGCCGGAGTAAGGGTTATGGTTTTGTGAAATTTGCGGATGAAAGTGAGCAAGTGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACTAGACCCATGAGGATTGGACCAGCCTCTAATAAAAACCCCAGCACTCAGACAAAAGCATCATATCAGAATCCTCAAGGCTCACAGAACGAGAATGATCCAAATAATACAACTATATTTGTTGGCAATTTGGACCCTAATGTCTCTGATGATCATCTGAGACAAGTTTTTGGTCAGTATGGAGAGTTGGTTCACGTGAAGATTCCAGCAGGCAAGCGATGCGGGTTTGTCCAATTTGCTGACAGGAGCTGTGCAGAAGAGGCAATAAGGCAATTAAATGGAACCATGCTGGGTGCACAAAGTGTTAGGCTTTCATGGGGCCGCAGTCCATCAAACAAACAGGCTCAGCCAGATGCAAACCAGTGGAATGGTGGTGGTGGCGGTGGTGGTGGTGGTGGTAGTGGTGGATACTATGGATATGCTCAAGGTTATGAGAATTATGGTTATGCTCCTACAGGACAGGACCCCAACATGTATGGCAGTTATCCAGGGTACCCTAACTACCAACCACCGCAGCAACAGCAGCAATTAGGATATAGCTAA 1239 0.5133 MMQPRPGVPPPNMGQQPPQQQYPPQQQPPYMMMPPQPQAPPQMWAPSAQAPQQQVAAPQQPAQPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEVTSMKVIRNKQTGQSEGYGFIEFSSRPGAERVLQTYNGTIMPNGGQSFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYLLQETFRSRYNSVKGAKVVIDRLTSRSKGYGFVKFADESEQVRAMTEMQGVLCSTRPMRIGPASNKNPSTQTKASYQNPQGSQNENDPNNTTIFVGNLDPNVSDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEAIRQLNGTMLGAQSVRLSWGRSPSNKQAQPDANQWNGGGGGGGGGGSGGYYGYAQGYENYGYAPTGQDPNMYGSYPGYPNYQPPQQQQQLGYS* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g0203 412 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 20 409 - -
Aev04g0203 412 CDD RRM2_SECp43_like 163 242 - -
Aev04g0203 412 SUPERFAMILY RNA-binding domain, RBD 48 150 IPR035979 GO:0003676
Aev04g0203 412 SUPERFAMILY RNA-binding domain, RBD 155 257 IPR035979 GO:0003676
Aev04g0203 412 CDD RRM3_NGR1_NAM8_like 268 339 - -
Aev04g0203 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 341 IPR000504 GO:0003723
Aev04g0203 412 MobiDBLite consensus disorder prediction 398 412 - -
Aev04g0203 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 332 IPR000504 GO:0003723
Aev04g0203 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 138 IPR000504 GO:0003723
Aev04g0203 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 229 IPR000504 GO:0003723
Aev04g0203 412 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 20 409 - -
Aev04g0203 412 SUPERFAMILY RNA-binding domain, RBD 254 371 IPR035979 GO:0003676
Aev04g0203 412 Gene3D - 249 382 IPR012677 -
Aev04g0203 412 MobiDBLite consensus disorder prediction 384 412 - -
Aev04g0203 412 MobiDBLite consensus disorder prediction 1 64 - -
Aev04g0203 412 CDD RRM1_SECp43_like 72 152 - -
Aev04g0203 412 SMART rrm1_1 165 239 IPR000504 GO:0003723
Aev04g0203 412 SMART rrm1_1 72 147 IPR000504 GO:0003723
Aev04g0203 412 SMART rrm1_1 270 337 IPR000504 GO:0003723
Aev04g0203 412 MobiDBLite consensus disorder prediction 238 270 - -
Aev04g0203 412 MobiDBLite consensus disorder prediction 45 61 - -
Aev04g0203 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 243 IPR000504 GO:0003723
Aev04g0203 412 MobiDBLite consensus disorder prediction 338 360 - -
Aev04g0203 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 151 IPR000504 GO:0003723
Aev04g0203 412 MobiDBLite consensus disorder prediction 1 44 - -
Aev04g0203 412 MobiDBLite consensus disorder prediction 338 353 - -
Aev04g0203 412 MobiDBLite consensus disorder prediction 235 270 - -
Aev04g0203 412 Gene3D - 156 248 IPR012677 -
Aev04g0203 412 Gene3D - 10 155 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g0203 Aev-Chr4 1246090 1249679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g0203 72 361 Eukaryotic Initiation Factors Gene Family AT2G23350 27.609 1.69e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g0203 - - aprc:113864230 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g3042 01 31863225 31875832 Aev04g0203 04 1246090 1249679 PCT