Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g0147 ATGGAGGGTGGTTCTAATGGGACTTCTTGCTTGATGGGGGGTTTCGGAGATCTAAACGCTACTACAATGATGATGATGCCCTCTTCTTTACTCACTGCTACTACTAATGCAAACACAAACACAAACTGTCTCTTTCTTCCCATGATGCCTTCTTCCTCCACCAGTAATCATCACCACCCGGACCCTAACCGCAATAACATCACTCCTTTCATGCTTGAGAATAACCACACCACCACCAACACCAACAACAACACTGCCTTAGGGTGTTATTTCATGGACACTAGTGACCACCACAACAGCAACAACAACGGAAGCTCTTCTTCTACACCTTCTTGTGCTGTCAAGGCCAAGATCATGGCCCATCCTCACTATCACCGCCTCTTATTAGCTTACGTCAATTGTCAAAAGGTTGGAGCACCTCCAGAAGTGGTGGCGAGGTTAGAGGAAGCATGTGCATCTGCGGCATCGATGGCCGCCGGATCAGCCTGCATAGGCGAAGATCCAGCGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGCTCACCAAGTACGAACAGGAGCTCTCCAAACCCTTAAAGGAAGCCATGCTCTTCCTTCACAGGATTGAGTCCCAGTTCAAGAATCTCACTATTTCTTCTTCTTCTTCCGACTTTGCTGCTGGTGGGAATGAGGGAGGAGATAGGAATGGGTCATCGGAAGACGATGTGGAGATAGAAAAGATGATAGACCCTCAGGCGGAGGACCGGGAGCTGAAGGGGCAGCTGCTGCGCAAGTACAGCGGATACCTGGGCAGCCTGAAGCAGGAGTTCATGAAGAAGAGGAAAAAGGGCAAGCTCCCCAAAGAAGCCAGGCAACAGCTCCTTGAGTGGTGGAGCAGACACTACAAGTGGCCTTACCCTTCTGAATCGCAGAAGCTGGCTCTGGCAGAATCGACGGGGCTGGATCAGAAGCAGATTAACAATTGGTTTATCAATCAGAGGAAGCGTCACTGGAAGCCCTCGGAGGACATGCAGTTTGTGGTTGTGGATCCAACCCAGCATCCTCCGCACTATTACATGGACAATCTTCTCGCCAATCCCTTTCCCATGGATCTCTCCAACACTATGCTCTAG 1113 0.4996 MEGGSNGTSCLMGGFGDLNATTMMMMPSSLLTATTNANTNTNCLFLPMMPSSSTSNHHHPDPNRNNITPFMLENNHTTTNTNNNTALGCYFMDTSDHHNSNNNGSSSSTPSCAVKAKIMAHPHYHRLLLAYVNCQKVGAPPEVVARLEEACASAASMAAGSACIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLHRIESQFKNLTISSSSSDFAAGGNEGGDRNGSSEDDVEIEKMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPTQHPPHYYMDNLLANPFPMDLSNTML* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g0147 370 Pfam KNOX1 domain 113 152 IPR005540 GO:0003677|GO:0005634
Aev04g0147 370 SMART ELK_2 250 271 IPR005539 GO:0003677
Aev04g0147 370 ProSitePatterns 'Homeobox' domain signature. 308 331 IPR017970 GO:0000981|GO:0006355
Aev04g0147 370 Gene3D - 275 337 - -
Aev04g0147 370 SUPERFAMILY Homeodomain-like 272 347 IPR009057 -
Aev04g0147 370 ProSiteProfiles ELK domain profile. 250 270 IPR005539 GO:0003677
Aev04g0147 370 Pfam ELK domain 250 271 IPR005539 GO:0003677
Aev04g0147 370 PANTHER - 3 359 - -
Aev04g0147 370 Pfam KNOX2 domain 163 210 IPR005541 GO:0003677|GO:0005634
Aev04g0147 370 Pfam Homeobox KN domain 290 329 IPR008422 GO:0003677|GO:0006355
Aev04g0147 370 SMART KNOX1_2 112 156 IPR005540 GO:0003677|GO:0005634
Aev04g0147 370 ProSiteProfiles 'Homeobox' domain profile. 270 333 IPR001356 GO:0003677
Aev04g0147 370 SMART KNOX2_2 160 211 IPR005541 GO:0003677|GO:0005634
Aev04g0147 370 SMART HOX_1 272 337 IPR001356 GO:0003677
Aev04g0147 370 MobiDBLite consensus disorder prediction 217 236 - -
Aev04g0147 370 CDD homeodomain 282 334 IPR001356 GO:0003677
Aev04g0147 370 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g0147 Aev-Chr4 936287 941537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g0147 114 370 Homeobox Transcription Factor Family AT1G62360 79.545 1.88e-130 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Aev04g0147 KNOX2 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g0147 - - gmx:547796 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g3080 01 32079204 32082854 Aev04g0147 04 936287 941537 PCT