Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g0114 ATGTCGATCGTCGAAGCCCCCACCGCCGACTGTGTTGTCACACAGCATCGCGTCAACCACTCATCCAAGCGGAAGCTAGATGACTACGGCCCCGCCTTAGACGACAACGACGACCTCACCTCCGCCGCCGAAAGCCTCTACGCTGCCGGGCTCCTCGCAAGGGTGAAGCGCGATGAACCTAACCCCGCCGTGAATTCCTCCTTCGTCGGCGACGCGGCGGTGGCTAGGGTTTCTGGCGCGCCATCGTCTTCCTCTTCGCGCGCTCCTTCGAGGAACGAGTCGACTTCGTCCGAGTCGCAGTTACAGTTCTTCGTGCGGCTGATGTCACCGGGCAACACGTTGGTAATGTACGCCTCGCCACACCAAACAGTGAAGTCGATCCACGAGAAAATCGGGGCGATCACCGGAATCCCTGTGTTCGAGCAGGGTTTGATTTACAGAGGGAAGCAGTTACAGTGGGAGCACACTCTTAAAGAGTGCGGAATCCAGAAGGACGCGAGCCTTCAACTCGTTGGGCGAATGAGGAGCACGGAGCACCCGCAGGCATGGCAGGTAATGGACAAGATGGTTTCCCTTGTTTGCAGTTTATGCAGGGGAGAAATTGTCAGCGAAGCTTTGAAGGAGATCAAGAGCCTCATCACCAGTTACTGGGTCATGGCGCCTAAGGTAGATGATGATTCTGCAGCATTGTATTTCAACATATTTGTGGCTTCAAGTGCTCCTTCCATGCTGGTAACGCTCTATGTCTCTCCCTTTAATGGTAACAAGGACCGTGCTGATGGTTCTATTAGGCATTTTCTGAATTCGTGTCGAAATAGTTTGTATAAGCCTTTTCATGGCCAGTGTGCGAAGGTGGTTTTGGAGTTTTGTAAGTTGCTTAGGAGGGTGGGGTGTAATGACCCTTTGTATGTGTATTGCCGCAGCACTTTGGGGTTTATGTTGGATGCTGCTGGTGTTTGCTCTAATTTTGGTCGTAGGCATGGTAAAGGGGTAGTAGGGGGAGGAGGAGGGTGTATTGTGCTGCTAGATATTTGCCCTTTTGTTCGCGAGATTGCGATTAAGCTGTTGAGGGATTTGGATTTGAGTATGGAACGCCCCGGCAGTTTGGGGCCGCTGTTGAGTGATGTTCAGGATTTTTCAGTTTTTTTGAACCCTTTGAGGAAGGGGATTTCAGACTTGCAAGCTATGAGGGGTTCGGGGGTGATTGAAAAGTGCCGCAAGGATGCCTTGCTTGCAGAGGAGGTAGATTATCTTCATCTTATATTTATTCAGTTTCTGAGCAAAATGGATGAGTGCCTTCGCCGCATGGAGGAATTCTTGGCTGACAAGCAACAAGGGGAAGGGGATATCACCTATTCATCGTGGTCTACGTATCTTTCCATCTTGAAGGAATTGTATGAAACCTCTAAGCTCTTTGATGGCGCCGAGGATAAATTCTGGATGGTTTTGACGAATCGACGAAGTATGGTGTCCCTGCTCATCATTCAATATGCAAAGAGAACTGATGATCATCAGTGGATTCTTGAGCACAAATGTGTGACCAATTTTGAATCGAGAAGGCATCTAGCAATGATGATGTTCCCTGATCTCAAAGAAGACTATGAGGAGTTACATGAGATGCTTATTGACAGGTCTCACATATTGGCTGAATCTTATGAGTACATAGCACAAGCAAAGCCTTCATCTCTACATTCTGGTTTATTCATGGAGTTCAAAAATGAGGAAGCAACAGGACCAGGTGTACTGAGGGAGTGGTTTCTCTTGGTCTGTCAAGCACTATTCAATCCAGAAAATGCTCTTTTTGTGCCATGCCCGAATGACCGCAGGAGGTTTTACCCTAACCCTGCATCCAAGGTAGATCCTCTGCACCTAAAGTACTTCAGCTTCTCTGGTCGTGTTATTGCATTGGCTTTAATGCATAAGGTGCAAGTGGGTATTATTTTTGACCGTGTGTTTTTCATGCAATTGGCTGGAAAATCTATTACTTTAGAAGATATACAGCATGCAGATCCTTACTTGTATAACAGCTGCAAGCAAATATTGGAGATGGATGCTAATTTCATTGATTCAGATGCATTAGGACTGACCTTTGTTAGAGAAGTGGATGAATTAGGAGACAGGAAAGTGATTGAGCTTTGCCCCGGTGGGAAAAGCCTTGTAGTGAATAGTAAGAACAGGGAGAAGTACATTGATCTTCTTATACGGAATCATTTTGTAACATCAATATCTGAGCAGGTATCACATTTCGCGAAGGGCTTTGGTGATATTCTTTCCAACTCAAGGCAACAGCAGTTATTCTTTCAAAGTCTAGAACGTGAAGATCTTGATTGCATGCTGCGAGGGAGTGAAGATATAATTTCTGTTGAAGATTGGATGGCCCATACCGATTATAATGGCTATAAAGAGACTGATTGTCAGATATCTTGGTTTTGGGAGATTGTTGGTAGAATGTCAGCAGAGCAAAGGAAGGTTCTTCTGTTCTTTTGGACATCTGTGAAATATTTGCCAGTTGAAGGTTTCCGTGGTTTGGCTTCCCGTCCAAACATTTACAAGTCCTTTGAGCCAGATGATCGCCTTCCGTCATCTCACACATGCTTCTACCGGCTTTGTTTCCCGGCGTATTCATCTATGGCTGTCATGCAAGATCGTCTTCAAGTCATCACTCAGGAACACATTGGTTGCAGTTTTGGTACTTGTTACATGATTATTGCATCTGCCCTTGAATTGGATAGAGAGAAGGTTTTCTAG 2748 0.4636 MSIVEAPTADCVVTQHRVNHSSKRKLDDYGPALDDNDDLTSAAESLYAAGLLARVKRDEPNPAVNSSFVGDAAVARVSGAPSSSSSRAPSRNESTSSESQLQFFVRLMSPGNTLVMYASPHQTVKSIHEKIGAITGIPVFEQGLIYRGKQLQWEHTLKECGIQKDASLQLVGRMRSTEHPQAWQVMDKMVSLVCSLCRGEIVSEALKEIKSLITSYWVMAPKVDDDSAALYFNIFVASSAPSMLVTLYVSPFNGNKDRADGSIRHFLNSCRNSLYKPFHGQCAKVVLEFCKLLRRVGCNDPLYVYCRSTLGFMLDAAGVCSNFGRRHGKGVVGGGGGCIVLLDICPFVREIAIKLLRDLDLSMERPGSLGPLLSDVQDFSVFLNPLRKGISDLQAMRGSGVIEKCRKDALLAEEVDYLHLIFIQFLSKMDECLRRMEEFLADKQQGEGDITYSSWSTYLSILKELYETSKLFDGAEDKFWMVLTNRRSMVSLLIIQYAKRTDDHQWILEHKCVTNFESRRHLAMMMFPDLKEDYEELHEMLIDRSHILAESYEYIAQAKPSSLHSGLFMEFKNEEATGPGVLREWFLLVCQALFNPENALFVPCPNDRRRFYPNPASKVDPLHLKYFSFSGRVIALALMHKVQVGIIFDRVFFMQLAGKSITLEDIQHADPYLYNSCKQILEMDANFIDSDALGLTFVREVDELGDRKVIELCPGGKSLVVNSKNREKYIDLLIRNHFVTSISEQVSHFAKGFGDILSNSRQQQLFFQSLEREDLDCMLRGSEDIISVEDWMAHTDYNGYKETDCQISWFWEIVGRMSAEQRKVLLFFWTSVKYLPVEGFRGLASRPNIYKSFEPDDRLPSSHTCFYRLCFPAYSSMAVMQDRLQVITQEHIGCSFGTCYMIIASALELDREKVF* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g0114 915 Gene3D Hect, E3 ligase catalytic domains 541 761 - -
Aev04g0114 915 ProSiteProfiles HECT domain profile. 559 899 IPR000569 GO:0004842
Aev04g0114 915 SMART ubq_7 103 173 IPR000626 GO:0005515
Aev04g0114 915 CDD HECTc 538 897 IPR000569 GO:0004842
Aev04g0114 915 Pfam Ubiquitin family 104 175 IPR000626 GO:0005515
Aev04g0114 915 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 83 897 - -
Aev04g0114 915 SMART hect_3 557 897 IPR000569 GO:0004842
Aev04g0114 915 Gene3D Hect, E3 ligase catalytic domain 659 741 - -
Aev04g0114 915 SUPERFAMILY Ubiquitin-like 102 188 IPR029071 -
Aev04g0114 915 Gene3D Hect, E3 ligase catalytic domain 782 898 - -
Aev04g0114 915 PRINTS Ubiquitin signature 133 153 IPR019956 -
Aev04g0114 915 PRINTS Ubiquitin signature 112 132 IPR019956 -
Aev04g0114 915 PRINTS Ubiquitin signature 154 175 IPR019956 -
Aev04g0114 915 ProSiteProfiles Ubiquitin domain profile. 101 177 IPR000626 GO:0005515
Aev04g0114 915 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 83 897 - -
Aev04g0114 915 SUPERFAMILY Hect, E3 ligase catalytic domain 534 885 IPR035983 GO:0004842
Aev04g0114 915 Gene3D - 93 191 - -
Aev04g0114 915 Pfam HECT-domain (ubiquitin-transferase) 588 891 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g0114 Aev-Chr4 733522 738194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g0114 101 175 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.333 1.89e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g0114 - - aip:107638691 1310.82