Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g0102 ATGGAAATGGATCCTGGCAAGCTTTTCATTGGCGGGATTTCCTGGGACACAAATGAAGACCGACTCAGACAATATTTCCAGAGTTTCGGCGATGTGGTGGAGGCTGTGATAATGAAGGATCGGACCACTGGGCGTGCCCGCGGCTTCGGCTTTGTTGTTTTTGCTGATCCTTCTGTTGCTGAACGAGTTGTGATGGAAAAGCATGTCATTGATGGTAGAACTGTTGAAGCAAAAAAGGCTGTCCCTAGAGATGATCAGAATGTTCTGAACAGAAGCAACAGCAGTGGTCATGGGTCACCTGGTCCTACTCCTACCCGCACAAAGAAGATATTTGTTGGAGGTCTAGCATCCACAGTTACTGAGAGTGACTTTAAGAACTACTTTGATCAATTTGGAACAATTACAGATGTTGTAGTGATGTATGATCATAACACTCAAAGGCCTAGAGGTTTTGGATTCATCACCTATGATTCTGAGGAAGCAGTTGAGAAGGTGCTGTTCAAAACTTTCCATGAGCTAAATGGTAAAATGGTTGAGGTTAAGAGGGCTGTTCCAAAGGAATTATCTCCAGGTCCAAGTAGAGGCCAAATAGGTGGATATAGTTATGGTCTGAGTAGAGTTAATAGCTTTTCTAATGGTTTCATTCAGGGATATAATCCGAGCTTGGTTGGAGGGCATGGACTTAAAATAGATGGCAGAATGAGTCCTGCTACTGTTGGGCGTAGTGGATATCCTCTTTTGAGTCATAATTATGGGACAGGACTCAACTTTGAGTCACCATTAAGCCAAAATGGAACTGCGAACTTTGCTTCTACCCTCATAGGACGGGCATTGAACTCTCCATACAGTGGAAGTCCAAGCAGGTACAATAATGCCATGGGGTATGCTAGTGCAAATGTAGGCAACAATTCAGCCATGAATTCTGCAAATCAGAATTTGTGGGGGAGTGGGAGTCTTAATTATGCTACTAACCCTACAAACTCTGATGCTTTTGCTGGCTATGGAAAAGAAAATGCGAGCATGGGTTCTTTTGGTAGTATAGGATCACTTTGGAGTTCATCCCTTGGTACAGATCAGGCTGGAACTATTGGCACTGGATATGGTAAGGGAAGTCTTAGTTTTAGCTCTGCGGATGTGATTTTAGGGTCAAAAGCTGTAGGTTATGGAAAAAGTAGCGAGAACACTGTTACTTCAGGTTCACCATATGGCTTATCAAATGGTAGTTATGATGATGCATACAAAGTTAATTTTGAAGCTGGCTCATTCTATGGGGACCATATGTGGAGATCATCACCTTCAGAACTGGAGGGTTCCGGCTCTCTTGGTTTTGGCCTTGGTCAAACTGTTTCAGACTTAATGAGCAAAAGCTCAGGTGGCCACATTGGGGCTTATGCTGTTGCCAATAGACAATCAAATAGAGGAATTGCTGCCTAG 1434 0.4351 MEMDPGKLFIGGISWDTNEDRLRQYFQSFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEAKKAVPRDDQNVLNRSNSSGHGSPGPTPTRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLFKTFHELNGKMVEVKRAVPKELSPGPSRGQIGGYSYGLSRVNSFSNGFIQGYNPSLVGGHGLKIDGRMSPATVGRSGYPLLSHNYGTGLNFESPLSQNGTANFASTLIGRALNSPYSGSPSRYNNAMGYASANVGNNSAMNSANQNLWGSGSLNYATNPTNSDAFAGYGKENASMGSFGSIGSLWSSSLGTDQAGTIGTGYGKGSLSFSSADVILGSKAVGYGKSSENTVTSGSPYGLSNGSYDDAYKVNFEAGSFYGDHMWRSSPSELEGSGSLGFGLGQTVSDLMSKSSGGHIGAYAVANRQSNRGIAA* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g0102 477 SMART rrm1_1 109 181 IPR000504 GO:0003723
Aev04g0102 477 SMART rrm1_1 7 78 IPR000504 GO:0003723
Aev04g0102 477 Gene3D - 5 88 IPR012677 -
Aev04g0102 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 185 IPR000504 GO:0003723
Aev04g0102 477 SUPERFAMILY RNA-binding domain, RBD 4 102 IPR035979 GO:0003676
Aev04g0102 477 SUPERFAMILY RNA-binding domain, RBD 100 205 IPR035979 GO:0003676
Aev04g0102 477 MobiDBLite consensus disorder prediction 81 108 - -
Aev04g0102 477 MobiDBLite consensus disorder prediction 86 102 - -
Aev04g0102 477 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 477 - -
Aev04g0102 477 Gene3D - 105 191 IPR012677 -
Aev04g0102 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 166 IPR000504 GO:0003723
Aev04g0102 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Aev04g0102 477 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 477 - -
Aev04g0102 477 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Aev04g0102 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Aev04g0102 477 CDD RRM2_DAZAP1 106 185 IPR034131 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g0102 Aev-Chr4 653809 656566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g0102 8 187 Eukaryotic Initiation Factors Gene Family AT2G36660 29.787 9.03e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g0102 K14411 - cit:102621909 628.246