Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g3462 ATGTTACCCCCCTCTCCAGAGCCATTTTCCTGCGCAGAAAGTGGCAGTGCCGCCGGTGGCAGTGCTACAAATAATAAAAGGCAGAGAAGGCCCGCTGGAACTCCAGATCCAGATGCTGAAGTGGTGTCGCTGTCCCCGAAGACGTTGCTGGAATCGGATCGTTATGTGTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAGAACCTGCAGATGCACAGGCGGAGGCACAAGGTGCCGTGGAAGCTGCTGAAGAGGGAGACGCCGGAGGTGAGGAAGAGGGTGTTCGTGTGCCCGGAGCCCAGCTGCTTGCACCACGACCCCTGCCACGCTCTCGGCGACCTTGTCGGCATCAAGAAGCACTTCCGCAGGAAGCACAGCAATCACAAGCAGTGGGCCTGCCACCAATGCTCCAAAGCCTATGCCGTCCACTCTGATTTCAAAGCCCATCTTAAAACCTGTGGCACCCGAGGCCACTCTTGCGATTGTGGCCGCGTTTTCTCTCGGGTGGAGAGCTTTATAGAGCACCAAGATGCCTGCAGCATAAGGGGGGAAGCGCAGATGCAACAAGGAGTGCAAGCACAAGCACCAGCACCAGCACCGGCAGCATGCTCCGGAACCACTTGGAGCCCCAGCCCTTGTCCCGCTAGATCTAGGGAGACAGATATTGTAGTAACTGCCACTGCTAAAGCCTCATCTATCAAAAACAGCGATAGCAACGTCAACGTAGTTAATGACAAAGCAGCAGCAGCACTCCTCCTACAGCCCCCAAACTTGGAGCTTCAGCTGTCCACAACCGCCGCGGAGACAAATGGTTATGATTATTCATTGTCATCATTTCATCACCATCATCATCAGTTGCGGATAGCGATGGCGGAGAAGGCGCAGGCGGAGGAGGCGAGGAAGCAAGCCAAGAGGCAGATGGAGCTGGCGGATCTTGAGTTCTCCAACGCCAGAAGGATGAGACAGCAAGCCCAAGCCGAACTCCACCAAGCCTATGCCCTCAAACACCATGCAATCAAACAGATCAATTCAGCCATGCTTCAGATCACCTGCCATGCTTGCAAACTCATCCAATTTCACCATGATGATGCTCCACTCCACCACAACTCTGCCAAAGCCGTTGCTGGCCAAATAAATGTACAACCACCCTAA 1155 0.5455 MLPPSPEPFSCAESGSAAGGSATNNKRQRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPEVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWACHQCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACSIRGEAQMQQGVQAQAPAPAPAACSGTTWSPSPCPARSRETDIVVTATAKASSIKNSDSNVNVVNDKAAAALLLQPPNLELQLSTTAAETNGYDYSLSSFHHHHHQLRIAMAEKAQAEEARKQAKRQMELADLEFSNARRMRQQAQAELHQAYALKHHAIKQINSAMLQITCHACKLIQFHHDDAPLHHNSAKAVAGQINVQPP* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g3462 384 SUPERFAMILY beta-beta-alpha zinc fingers 52 78 IPR036236 -
Aev03g3462 384 Gene3D Classic Zinc Finger 33 97 - -
Aev03g3462 384 MobiDBLite consensus disorder prediction 1 42 - -
Aev03g3462 384 PANTHER OS03G0310200 PROTEIN 282 366 IPR039288 GO:0009630
Aev03g3462 384 MobiDBLite consensus disorder prediction 16 30 - -
Aev03g3462 384 SMART c2h2final6 132 159 IPR013087 -
Aev03g3462 384 SMART c2h2final6 55 77 IPR013087 -
Aev03g3462 384 SMART c2h2final6 96 126 IPR013087 -
Aev03g3462 384 MobiDBLite consensus disorder prediction 197 217 - -
Aev03g3462 384 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 4 276 - -
Aev03g3462 384 Coils Coil 287 328 - -
Aev03g3462 384 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Aev03g3462 384 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 282 366 - -
Aev03g3462 384 PANTHER OS03G0310200 PROTEIN 4 276 IPR039288 GO:0009630
Aev03g3462 384 Gene3D Classic Zinc Finger 117 196 - -
Aev03g3462 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 77 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g3462 Aev-Chr3 31917616 31919648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g3462 19 358 C2H2 Transcription Factor Family AT1G25250 55.271 3.41e-127 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev03g3462 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g3462 K25871 - gmx:100798167 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g3462 03 31917616 31919648 Aev05g3555 05 34706333 34708975 PCT