LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev03g3375	ATGCCATCCGTGACTTGGGGCGTGATTCAGGGTCGCAAGGAGAAGCTGGTGTCGCGGGTAATCGTATTCGACTACCTCAAGGGTTTGGGAATCGTCCCTGACGAGTTACAAGACCTTGAGCTTCCTTCAACCGTTGAGGTCATGAGGGAGCGCGTCGAGTTCCTCCAGAAACTAGGGTTGACAATTGATGACATCAACGATTACCCTTTGATGCTGGGTTGCAGCGTGAGGAAGAACATGATTCCCGTTTTGGGGTACTTGGAGAAAATTGGGATCCAAAGGTCGAAACTTGGCGGATTCATAAAGAGCTACCCTCAAGTGTTGCATGCCAGTGTGATTGTTGAGCTTGTCCCTGTTGTGAAGTTCCTTAGGGGACTTGATGTGGAGAGAGAAGATATTGGGTATGTGTTGCAGAAGTACCCTGAACTTCTTGGGTTCAAGCTTGAGGGTACTATGAGTACCTCTGTGGCTTATCTTGTTAGCATTGGTGTTAATCCTAGGGATATTGGTCCCATGGTGACTCAGTATCCTTATCTTTTGGGGATGAGAGTTGGGACTGTGATAAAGCCTTTAATTGATTACTTGGTCTCTTTAGGGCTGCCAAAGAAGATTTTGGCTAGGATGTTGGAGAAAAGAGCTTATTTGCTTGGATATGATCTTGAAGAGACTGTGAAGCCCAATGTGGATTGTTTGATCAGTTTTGGGATAAGGAGGGAATGTTTGCCTTCTGTTATTGCTCAATATCCTCAGATTCTTGGATTGCCACTTAAGGCTAAGTTGTCTTCTCAGCAGTACTTCTTCAGTTTGAAGCTCAAGATTGATCCTGAAGGGTTTGCAAAAGTGGTGGAGAAGATGCCACAGGTGGTTAGCCTCAACCAAAATGTGATCATGAAGCCGGTTGAGTTCCTCCTCGGGAGGGCTTTGCCGCCCCAAGACGTCGCTAGCATGGTGGTCAAGTGTCCTCAGTTAGTGGTACTGAGAGTAGAGCTAATGAAGAACAGTTTTTACTTCTTCAAGAGTGAGATGGGGAGGCCACTGAAAGAGCTTGTGGAGTTCCCTGAATACTTTACTTACAGTTTGGAATCCAGAGTCAAACCTAGGTACCAGAGGCTAAAAAGCAAGGGGATAAGGTGTTCATTGAATTGGATGCTGAATTGTAGTGACCAGAGATTTGAAGAGAGGTTGCAGGGTAATTACATTGAAACTGAGAGTGTTGGTCCATGGTTCTGTATGGGTGGGAAGTTGGAGCTGCCAGGGAATAATGCCATAGTGTCAGATCAGGAAGAGGAGAGTGATGATGAAGTATTATACAGAAGAACTGTTTCTCTTTAG	1332	0.4557	MPSVTWGVIQGRKEKLVSRVIVFDYLKGLGIVPDELQDLELPSTVEVMRERVEFLQKLGLTIDDINDYPLMLGCSVRKNMIPVLGYLEKIGIQRSKLGGFIKSYPQVLHASVIVELVPVVKFLRGLDVEREDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYLLGMRVGTVIKPLIDYLVSLGLPKKILARMLEKRAYLLGYDLEETVKPNVDCLISFGIRRECLPSVIAQYPQILGLPLKAKLSSQQYFFSLKLKIDPEGFAKVVEKMPQVVSLNQNVIMKPVEFLLGRALPPQDVASMVVKCPQLVVLRVELMKNSFYFFKSEMGRPLKELVEFPEYFTYSLESRVKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGNYIETESVGPWFCMGGKLELPGNNAIVSDQEEESDDEVLYRRTVSL*	444

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev03g3375	443	SMART	mt_12	242	274	IPR003690	GO:0003690\|GO:0006355
	Aev03g3375	443	SMART	mt_12	346	377	IPR003690	GO:0003690\|GO:0006355
	Aev03g3375	443	SMART	mt_12	314	345	IPR003690	GO:0003690\|GO:0006355
	Aev03g3375	443	SMART	mt_12	134	165	IPR003690	GO:0003690\|GO:0006355
	Aev03g3375	443	SMART	mt_12	279	309	IPR003690	GO:0003690\|GO:0006355
	Aev03g3375	443	SMART	mt_12	98	129	IPR003690	GO:0003690\|GO:0006355
	Aev03g3375	443	SMART	mt_12	206	237	IPR003690	GO:0003690\|GO:0006355
	Aev03g3375	443	SMART	mt_12	170	201	IPR003690	GO:0003690\|GO:0006355
	Aev03g3375	443	SMART	mt_12	62	93	IPR003690	GO:0003690\|GO:0006355
	Aev03g3375	443	PANTHER	EXPRESSED PROTEIN	2	425	-	-
	Aev03g3375	443	Gene3D	Transcription termination factor 3, mitochondrial	189	402	IPR038538	-
	Aev03g3375	443	Gene3D	Transcription termination factor 3, mitochondrial	50	188	IPR038538	-
	Aev03g3375	443	PANTHER	CGI-12 PROTEIN-RELATED	2	425	IPR003690	GO:0003690\|GO:0006355
	Aev03g3375	443	Pfam	mTERF	84	392	IPR003690	GO:0003690\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev03g3375	Aev-Chr3	31423865	31425196	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Aev03g3375		mTERF	7.9e-108	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev03g3375	K15032		-	gmx:100809590	806.979

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev03g3375	03	31423865	31425196	Aev05g3482	05	34104595	34106525	PCT