LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev03g3334	ATGTCTTCTTCAAAGAGTATGAGTAGTTGTAGTGAAGATGACAATGAGCTTAGAAGAGGACCTTGGACTCTTGAAGAGGATAACATGCTAACTCAATACATTGCTAATCAAGGTGAAGGGAGATGGAACTTACTGGCTAAACGTTCAGGATTGAAGAGAACAGGTAAAAGTTGCAGATTGAGGTGGCTAAATTATCTAAAGCCGGACGTTAAGAGAGGAAATTTGACACCCCAAGAACAGCTTTTGATTCTTGAACTCCACTCCAAGTGGGGAAACAGGTGGTCAAAAATTGCACAGCATTTGCCAGGAAGAACAGACAATGAAATCAAGAACTATTGGAGGACTCGGATTCAGAAACAAGCGAGGCATTTGAAGATTGACACTGATAGCACAGAGTTTCAAGAGCTTGTGAGGCGTTTCTGGATCCCAAGATTGGTTCAGAAAGTAAAAGAATCATCATCTGCTACTTCTTCTTCTTCTTCAGCCATATCAATCCAAAACCATGCAGAGGTTGTTCCTCTGCCTCATGATAGTGTATCTCAGTATTATCACTCAGATGATGGGAAAATATCAGCACCAACACCTTGGCATGAGCCCTGTGTGCAGCAGCAGCAACAAGCAGCAGGTCCCAATTATGAGCACAACTCGGACTCAGAGCACAACAATGGTTCATGCATCTCCTTTTCTGAGACAGTAGTGTATGATCCAAAAGTGCCTCAGCTTTTGGGATACAGCACCAATGAGTTCAATGGCTTAGAAGCTAATAATGACTTTGGGTCCTTCACATACGATGGGTACAATGAAAATAACAATGCCTATGATGAGATTGGCACTTTCAACATGGCAGCAACAACAAGAGCTGCTGCTGCTGAGGATGTGGAATACCCTATTGGTGATGGCCAAATGGCAGAGAGCAATAGGGGGACTCTCACTCTCGGTCTCGGCAGCAGATCTCTCCGGCGCCTGATTCTCGCTCGTCGAGTCGTGAAGATGTACACATCAAGGAAGAAAATCCACAAAGATAAGGATGCTGAGCCAACTGAATTTGAAGAGTCAGTTGGACAGGCATTGTTTGATCTTGAAAATACTAACCCAGAGCTTAAAAGTGATCTGAAGGATCTATACATCAATTCTGCAATGCAGGTTGATGTTTCTGGGAGCCGCAAGGCTGTTGTTATCCATGTCCCATACAGATTAAGGAAAGGCTTCCGGAAGATTCATGTCAGGCTTGTCAGGGAGCTTGAGAAGAAGTTTAGTGGCAAGGATGTAGTTCTGATTGCCACCCGGAGGATAGTAAGGCCTCCAAAGAAAGGCTCTGCTGTTCAGCGTCCTCGTAGCCGTACCCTCACCGCTGTTCATGAGGCAATGCTGGAGGATATTGTATTGCCTGCTGAGATTGTTGGGAAGCGTGTGAGATATAGAATCGATGGATCTAAGATTATGAAGGTTTTCTTGGACCCAAAGGAGCAAATCAACACAGGGTTAAAGTTGGAGACTTTTGCGGCGGTGTACAGGAAGCTGTCTGGCAAAGATGTTGTGTTTGAGTATCCTGTCACAGAGCCTTAG	1566	0.4464	MSSSKSMSSCSEDDNELRRGPWTLEEDNMLTQYIANQGEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHLKIDTDSTEFQELVRRFWIPRLVQKVKESSSATSSSSSAISIQNHAEVVPLPHDSVSQYYHSDDGKISAPTPWHEPCVQQQQQAAGPNYEHNSDSEHNNGSCISFSETVVYDPKVPQLLGYSTNEFNGLEANNDFGSFTYDGYNENNNAYDEIGTFNMAATTRAAAAEDVEYPIGDGQMAESNRGTLTLGLGSRSLRRLILARRVVKMYTSRKKIHKDKDAEPTEFEESVGQALFDLENTNPELKSDLKDLYINSAMQVDVSGSRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHEAMLEDIVLPAEIVGKRVRYRIDGSKIMKVFLDPKEQINTGLKLETFAAVYRKLSGKDVVFEYPVTEP*	522

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev03g3334	521	ProSiteProfiles	Myb-like domain profile.	14	66	IPR001005	-
	Aev03g3334	521	ProSiteProfiles	Myb-like domain profile.	67	117	IPR001005	-
	Aev03g3334	521	PANTHER	40S RIBOSOMAL PROTEIN S7	275	521	-	-
	Aev03g3334	521	MobiDBLite	consensus disorder prediction	193	221	-	-
	Aev03g3334	521	SMART	sant	18	68	IPR001005	-
	Aev03g3334	521	SMART	sant	71	119	IPR001005	-
	Aev03g3334	521	PANTHER	40S RIBOSOMAL PROTEIN S7	275	521	IPR000554	GO:0003735\|GO:0005840\|GO:0006412
	Aev03g3334	521	SUPERFAMILY	Homeodomain-like	17	113	IPR009057	-
	Aev03g3334	521	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	67	121	IPR017930	-
	Aev03g3334	521	Gene3D	-	19	71	-	-
	Aev03g3334	521	Gene3D	-	75	118	-	-
	Aev03g3334	521	ProSitePatterns	Ribosomal protein S7e signature.	409	422	IPR000554	GO:0003735\|GO:0005840\|GO:0006412
	Aev03g3334	521	CDD	SANT	76	115	IPR001005	-
	Aev03g3334	521	MobiDBLite	consensus disorder prediction	197	221	-	-
	Aev03g3334	521	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	14	66	IPR017930	-
	Aev03g3334	521	Pfam	Ribosomal protein S7e	337	516	IPR000554	GO:0003735\|GO:0005840\|GO:0006412
	Aev03g3334	521	CDD	SANT	21	66	IPR001005	-
	Aev03g3334	521	Pfam	Myb-like DNA-binding domain	72	115	IPR001005	-
	Aev03g3334	521	Pfam	Myb-like DNA-binding domain	19	66	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev03g3334	Aev-Chr3	31164093	31168645	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev03g3334	331	520	Cytoplasmic Ribosomal Protein Gene Family	AT3G02560	76.842	8.03e-104	307

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Aev03g3334		Ribosomal_S7e	3e-77	CL0652

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev03g3334	K02993		K09422	gmx:778042	404.831