Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g3323 ATGATCACAGACATGAAAGGTGGGGCAGGTGCCTTGGGTGCCAAGACAGCAAGAGCTTGTGACAGCTGCCTGCGCAGAAGGGCAAGGTGGTTTTGCGGAGCTGATGATGCTTTCCTCTGCCATGGCTGTGACAACTTGGTCCACTCTGCAAACCAATTAGCAAGCCGGCACGAAAGGGTTAGGCTTCAGACTGCTTCATGCAAGGTGGTAACCACAACAGCAGCAGCACAGGCCTGGCACAGTGGATTCACCCGCAAGGCAAGGACCCCTCGCCACAACAAGCACCTGGCCCTTCAACAGAGGCTCAAGGACCAAGTTCTCTTCAACACCACTTGTGTTCTCCCTGTTGTGCCAGAGTTAGGTGTTGAGGAGCCCTTGCTTGATGCTGATGAGAGTGAGGAGCAGCTTCTCTGCCGTGTCCCTGTGTTTGACCCTTTTGATGCAGAGCTTTGCAGTGTTTACAATGAAGTTAAAAGCCATGGTGGTGGTGGTGGTGGCGATGATGGTTGTGATTTGGATAGTTTCTCTGAGTTTCTTCCATCAGATATGGACCTTGCTGTGTTTGCTGCTGATGTTGAGACCCTGCTTGGAAGTGGGATTGATGAGGATTCTTCTTCACCTGCTGATGTGAAAAAAGGGTCACCAGAAGATATTGAAGGTGTAGTGAGATCGGATGCATGTGTGCAGGGAGAGGGGGCCAAGAGTAGCAGTGCTGCAATGGTGAAGGTTGAAGATGAGGAGGAAGAAGAAGAACAAGAGCTTGATGCTGATACAGCCTGTCATTTGGAGTCGGTTCTTGACATGACCAGCGATGCCTTTGATTGGAACCTTGACTCTGTGCTCTCTCCTTCCCTTGAACATGAGGAAAAGACGGTGCTGCCAGCGGCGAGTACTAATGGTAGTGATGTTGCTGGTGATGAAGTGAGAACAAAGAGAGACATATTTTTGAGACTAAACTATGAAGATGTTATTGCTGCTTGGGCAAGCCAAGGTTGTCCATGGACAACAGGAAACCCTCCAAAGTTCAATTCTGATGATATTGATTATTGGTGGCCAAACTTCTTGGATGCGCAGTGCTCTTCTTATGGAGGAGTGAGAAGCTTAAGGGGGCAGATAGTAGGAGGTGGAGATGGGGGAAGAGAAGCAAGAGTATCAAGGTACAGAGAGAAGAGAAGAACTCGTTTGTTTGCAAAGAAGATAAGATATGAGGTGAGGAAACTGAATGCAGAGAAGAGACCAAGAATGAAAGGTAGGTTTGTGAAGAGGGCATGCTTTGTTGGAGCCAGTAATAATGCTGCTTCTGCTGCTGCATCATACCACTGA 1323 0.4868 MITDMKGGAGALGAKTARACDSCLRRRARWFCGADDAFLCHGCDNLVHSANQLASRHERVRLQTASCKVVTTTAAAQAWHSGFTRKARTPRHNKHLALQQRLKDQVLFNTTCVLPVVPELGVEEPLLDADESEEQLLCRVPVFDPFDAELCSVYNEVKSHGGGGGGDDGCDLDSFSEFLPSDMDLAVFAADVETLLGSGIDEDSSSPADVKKGSPEDIEGVVRSDACVQGEGAKSSSAAMVKVEDEEEEEEQELDADTACHLESVLDMTSDAFDWNLDSVLSPSLEHEEKTVLPAASTNGSDVAGDEVRTKRDIFLRLNYEDVIAAWASQGCPWTTGNPPKFNSDDIDYWWPNFLDAQCSSYGGVRSLRGQIVGGGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRACFVGASNNAASAAASYH* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g3323 440 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 428 - -
Aev03g3323 440 Pfam CCT motif 380 422 IPR010402 GO:0005515
Aev03g3323 440 ProSiteProfiles CCT domain profile. 380 422 IPR010402 GO:0005515
Aev03g3323 440 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 428 - -
Aev03g3323 440 CDD Bbox1_BBX-like 19 62 - -
Aev03g3323 440 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270
Aev03g3323 440 Coils Coil 233 253 - -
Aev03g3323 440 SMART bboxneu5 15 62 IPR000315 GO:0008270
Aev03g3323 440 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g3323 Aev-Chr3 31102372 31103781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g3323 5 422 C2C2-CO-like Transcription Factor Family AT1G25440 42.760 4.61e-94 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Aev03g3323 zf-B_box 1.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g3323 - - adu:107478728 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g3323 03 31102372 31103781 Aev05g3423 05 33692289 33693942 PCT