LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev03g3303	ATGGCAAGTCGACTTAAGGAAGAGGAGAAAAATGAACGAATAATTCGAGGTCTTCTCAAACTTACACCGAACCGAAGATGTATTAACTGCAACAGCTTGGGACCACAATATGTGTGCACAAATTTCTGGACATTTGTGTGCACAAACTGTAGTGGAATACACCGGGAATTTACACACAGAGTAAAATCAGTTTCGATGGCTAAGTTTACTTCTCAAGAAGTTAGTGCACTTCAGGAAGGAGGAAATCAGCATGCAAAAGAAATTTTCTTTAAAGAATGGGATCCTCAACGCCATTCCTTCCCTGATAGCAGTAATATAGACAGGCTCAGGGACTTTATTAAGCATGTTTACGTGGATAGAAGATTTGCTGGTGAGAGGACCTCTGACAAACCTCCAAGAGTAAAGATGGGTGACAAGGATGATTACTATGAAAACAAAAGGACGGACACATATCAAGAAGGAACTAAAAGCCCTCCATATGAGGACGCATATGAACGTCGTTATGGTGATAGATCTAGTCCTGGTGGAAGAAGTCCGGGATATGATCAAGAAAGTAGGCAATATGGTGATTACAAGAGAAGCCCCGGTCGTCCTCCAATAATTAATGATTGGCGTCGCGAAGATAGATTTGGAGATGGGAAGAAATTTGATGATCGTAGAATATCTGATGGAAATTATAGGGCGGAAAGCCAATCCCCTGCGCCAGCCAAAAATATGGATTTTTCTGGCTCACCTGTGGTCCGACCTGTAAGAGATATTTTGGGAGAAAATGTAGTACCTCTTCGGATCATTGAACCACCCAAAACAAACAGTGGAAGTGCTGCTGATGGCTCAGCACTCACACAGAGAACTGCATCTTCTAATGGCTTAGCATCCAATAATGGAGCGTCGATAGAAGTTAAGCTTGAGACTACCAAGAGTCTTATTGATTTTGATGATGATCCTGAGCCACCTGTTATGCCAGCAATTCCCCAAACCCAACAAACTACTGTGACTCAGCCTGTTGTACCAGAAAATTCCAGTGACAACAATTGGGCCTCTTTTGATGTTGCTCCTGAGGCAAAAGCAGCTCCGGGCCCTTCAAATGTAAATCCACTTGAATCTATGCTGTCCCAATTGTCAGTACCAGCATCTTTACCTGCTCATGTTTCTGCAGCCCAAGGGCCTGTGACAGGATCAGTTCTTGCCACTACTGCTGCCGGAGCTCCAACTGTTAGTAGCTTCTCAACATTCCCATCCAATGGTACTTCAGTAACATCTCCTGGATCATCAACTGTATCACCAATCAATAATCCAGGGCAGTGGGCTGGTTTGCAGTATCAGCAACCTTTTTATTCTGCTACCGTTAGTCAGCCAACTACTCAACAAGTTACACCTTTTCCTGGAAATATCTCGCAGCCCTGGAATGTTACTTCTGTGCCCAAAGACCCAGGGCAACTAAGTACACCAATGCCACATTCATCTCATCAGGAAGCAAAGCCTGCCAATGAGACTAGATCCAGTGTTGTTTCACAAACTTCTATCGCAAACGTAAAACCAAGTGGAAGAAATGAACTTCCAGAGGATCTATTCACTGTCAAATATTCATCCTCCCCTGCTCCAGTTCCTGGTTGGCAAATGGGTACACCCCATGGCATGGGCGTCTCAATTCAATATAGTAATGTGGTGCCCTTGTCAAGTTTTCCACAACCAACAAAATCGCTGAATCCGTTTGATGTGGCCAATGGACCAACTCCAGCTCAAGCTCCAACTTTTCCTTCCATGTCATCTTTGCAAGGTGCTCTGCCTAGAGTAACACCTTCAGGCCCAATGCACCCTTCAAGCCTTGGCAATCCATCTATTGCCTGGAATATGCCCTCTTCATCGTCATATGTATCAATGCTGCCTCCACAAGCACAGAATCTACCATCAGCAATGGGACCAAGGGCGTACATGGGACAACAAATGCCAACTAACATGCCAATGCCAAGGCAAGAAATTGCAACTTTTGGTTCTCAGGCTGGTGCTTTTGGCTTCTCAAATATGTCAACCCCTGCAATCCCAAACCCCTTCCCTGCGGGGAATCCTTTCGGATGA	2076	0.4475	MASRLKEEEKNERIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVSALQEGGNQHAKEIFFKEWDPQRHSFPDSSNIDRLRDFIKHVYVDRRFAGERTSDKPPRVKMGDKDDYYENKRTDTYQEGTKSPPYEDAYERRYGDRSSPGGRSPGYDQESRQYGDYKRSPGRPPIINDWRREDRFGDGKKFDDRRISDGNYRAESQSPAPAKNMDFSGSPVVRPVRDILGENVVPLRIIEPPKTNSGSAADGSALTQRTASSNGLASNNGASIEVKLETTKSLIDFDDDPEPPVMPAIPQTQQTTVTQPVVPENSSDNNWASFDVAPEAKAAPGPSNVNPLESMLSQLSVPASLPAHVSAAQGPVTGSVLATTAAGAPTVSSFSTFPSNGTSVTSPGSSTVSPINNPGQWAGLQYQQPFYSATVSQPTTQQVTPFPGNISQPWNVTSVPKDPGQLSTPMPHSSHQEAKPANETRSSVVSQTSIANVKPSGRNELPEDLFTVKYSSSPAPVPGWQMGTPHGMGVSIQYSNVVPLSSFPQPTKSLNPFDVANGPTPAQAPTFPSMSSLQGALPRVTPSGPMHPSSLGNPSIAWNMPSSSSYVSMLPPQAQNLPSAMGPRAYMGQQMPTNMPMPRQEIATFGSQAGAFGFSNMSTPAIPNPFPAGNPFG*	692

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev03g3303	691	Pfam	Putative GTPase activating protein for Arf	13	124	IPR001164	GO:0005096
	Aev03g3303	691	Gene3D	Arf GTPase activating protein	2	132	IPR038508	-
	Aev03g3303	691	PANTHER	ARFGAP/RECO-RELATED	1	691	IPR044820	GO:0005096
	Aev03g3303	691	MobiDBLite	consensus disorder prediction	265	293	-	-
	Aev03g3303	691	CDD	ArfGap_AGFG	12	122	-	-
	Aev03g3303	691	MobiDBLite	consensus disorder prediction	271	293	-	-
	Aev03g3303	691	PANTHER	ARF GTPASE ACTIVATOR	1	691	-	-
	Aev03g3303	691	MobiDBLite	consensus disorder prediction	124	244	-	-
	Aev03g3303	691	MobiDBLite	consensus disorder prediction	472	517	-	-
	Aev03g3303	691	MobiDBLite	consensus disorder prediction	404	430	-	-
	Aev03g3303	691	SUPERFAMILY	ArfGap/RecO-like zinc finger	11	123	IPR037278	-
	Aev03g3303	691	MobiDBLite	consensus disorder prediction	199	225	-	-
	Aev03g3303	691	MobiDBLite	consensus disorder prediction	124	151	-	-
	Aev03g3303	691	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	12	130	IPR001164	GO:0005096
	Aev03g3303	691	SMART	arf_gap_3	12	130	IPR001164	GO:0005096
	Aev03g3303	691	MobiDBLite	consensus disorder prediction	472	513	-	-
	Aev03g3303	691	PRINTS	HIV Rev interacting protein signature	43	60	IPR001164	GO:0005096
	Aev03g3303	691	PRINTS	HIV Rev interacting protein signature	24	43	IPR001164	GO:0005096
	Aev03g3303	691	PRINTS	HIV Rev interacting protein signature	61	82	IPR001164	GO:0005096

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev03g3303	Aev-Chr3	30957290	30962788	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev03g3303	12	122	C2H2 Transcription Factor Family	AT4G21160	33.333	8.23e-12	65.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev03g3303	-		-	gmx:100781002	988.408