Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g3250 ATGAGCAGCACCAACAACGATGATGCCGTCATCCATTTGGGCGGTTTCGATCTTGAAGAGGCTCTTGCCATGGTGGCCGGAGAACCACCGCGGCTGCTATTAGCGGCGTCCAAGAGCTACGTGTCGAAGCTGCCGGCGGTGGAGGATGATGTACTGATCTGCTCCGTTTGTATGGAGCAGTTATCATCGGTAGAGAAAAGCGGTGGGGGGAGCAAGCGAGTCCCGTGCGGCCACGTGTACCACTCAGAGTGCATCACCTTGTGGCTCTCACACTGCGACTCTTGCCCTCTCTGCCGCCGCCATATCCCCTTCCTTCACTAA 321 0.5732 MSSTNNDDAVIHLGGFDLEEALAMVAGEPPRLLLAASKSYVSKLPAVEDDVLICSVCMEQLSSVEKSGGGSKRVPCGHVYHSECITLWLSHCDSCPLCRRHIPFLH* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g3250 106 Pfam Ring finger domain 54 99 IPR001841 -
Aev03g3250 106 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 16 102 - -
Aev03g3250 106 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE 16 102 - -
Aev03g3250 106 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 104 IPR013083 -
Aev03g3250 106 SMART ring_2 54 98 IPR001841 -
Aev03g3250 106 SUPERFAMILY RING/U-box 45 104 - -
Aev03g3250 106 ProSiteProfiles Zinc finger RING-type profile. 54 99 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g3250 Aev-Chr3 30662399 30662719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g3250 12 103 C3H Transcription Factor Family AT3G02340 33.962 1.51e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g3250 - K22378 gmx:102669154 111.309