Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g3222 ATGATGCTTGGGGAGCCCCATCGACCGAATCCGACGGTCCACGTACCACCGTGGCCAACACTCATCGACGATCCAACCGCTGAGATCTTTTCCCCTCTGAGTCTGAGTCCTTTCTCCCTCACCGGAGTTTCCGTACACTCGGACTCCAATGCCGGCGACTACTCTCCCTACTTCATGCACGAAGCTCTCTCGGCGCTGCAGCGCTACCTCCCATCAAACGACGTCGCGGAGGGCGATTCTGACTCGGAGGCTCTTCCGGACTCGGCGGTGGACGCGTACTCGTGCGACCACTTCCGCATGTTCGAGTTCAAGGTGAGGAGGTGCGCACGTGGGAGGTCACATGACTGGACGGAGTGTCCGTACGCGCATCCCGGCGAGAAGGCTCGCCGCCGTGACCCGAGGAAGTACCACTACTCCGGCACGGCGTGCCCTGATTTCCGCAAAGGTACTTGCAAGAAAGGCGACGCGTGCGAGTACGCGCACGGCGTGTTCGAGTGCTGGCTCCACCCAGCGCGTTACCGCACACAGCCATGCAAGGACGGAACCAGTTGCCGGAGGAGGGTCTGTTTCTTCGCTCACACGCCGGAGCAACTCAGGGTTTTGCCTCAGCACAGTCCACGGAGCGTTGATTCCTACGACGGTTCCCCTCTGAGGCACGCTTTGGAGTCATCTTGTGCCAAAACGCTGCCGTTTCTGTCTTCACCTGGATCGGTTTCCCCGACTGAGGAGTCTCCACCGGTGTCGCCGGTGGCTCGCTCATTGGGCCGGTCGTTGGGCTCTGGGCCCGTAAACGTTAGTGAGATGGTGGCTTCTCTGCGTAATTTGCAACTTGGTAAGGTGAACTCTTTGCCTTCCTCTTGGAATGTTCAGGTGGGCTCTCCCCGGTTCGGATCTCCTCGGGGACCCGTGATCCGACCCGGGTTCTGCAGTTTGCCTTCGACCCCCACGGAGGCGCCGGGTCGGGGCGGTGTGAACTATTTCGATGTGTGGGATCAGGGTGGTTGCGAGGAGGAGCCTGTGATGGAGAGGGTGGAGTCTGGGAGGGATATAAGGGCCAAGATGTTTGAGAAATTGAGCAAGGAGAACTCTCTGGGTAGATCGGGTTCGGGTTCTGAGGCCGGGGCTCCGGATGTTGGGTGGGTTTCGGAGCTGGTCAATGTGAGGAGGCAGGGGAGAAGAAGAATGGTGGGAGATTGA 1197 0.5982 MMLGEPHRPNPTVHVPPWPTLIDDPTAEIFSPLSLSPFSLTGVSVHSDSNAGDYSPYFMHEALSALQRYLPSNDVAEGDSDSEALPDSAVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGTCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQHSPRSVDSYDGSPLRHALESSCAKTLPFLSSPGSVSPTEESPPVSPVARSLGRSLGSGPVNVSEMVASLRNLQLGKVNSLPSSWNVQVGSPRFGSPRGPVIRPGFCSLPSTPTEAPGRGGVNYFDVWDQGGCEEEPVMERVESGRDIRAKMFEKLSKENSLGRSGSGSEAGAPDVGWVSELVNVRRQGRRRMVGD* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g3222 398 Gene3D - 138 201 - -
Aev03g3222 398 ProSiteProfiles Zinc finger C3H1-type profile. 138 164 IPR000571 GO:0046872
Aev03g3222 398 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 386 - -
Aev03g3222 398 PANTHER UNKEMPT FAMILY MEMBER 7 386 IPR045234 -
Aev03g3222 398 MobiDBLite consensus disorder prediction 233 255 - -
Aev03g3222 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 162 IPR000571 GO:0046872
Aev03g3222 398 SMART c3hfinal6 172 195 IPR000571 GO:0046872
Aev03g3222 398 SMART c3hfinal6 137 163 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g3222 Aev-Chr3 30463226 30464528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g3222 84 282 C2H2 Transcription Factor Family AT5G12850 51.724 6.66e-60 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aev03g3222 zf-CCCH 3.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g3222 - - jre:109010264 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g3222 03 30463226 30464528 Aev03g3222 03 30463226 30464528 ECH