Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g3150 ATGGCTTCCTTGCCAAGTTTCATTTTGTTGTTCTTGTGCAGCATCCTTGTGTTTGGTGTGGCGGACACAATTGGTCACAAGGTGAGGTGTGAGAGGACATCATGCGTAAAGGGAGGGATTTCGATAGAGTTCCCATTTTGGTTGAGAGAAGGCAATGAAACCCCAAACCCTTGGTGCGGTTACCCAGGGTTCGAGCTCTCGTGTACCAATACAACAGGATTCAGCGAACCACTGGTGAATCTCCCAGGAACAGGGGATTTCTCGGTCAAGTTCCTATCACTAGAAGATCAAGTGGTTTGGATCAACGATCCTGATGAGTGCCTCGCCAATCGCATCATGCGTAACCGTGGATTGAATCTCCAAGGTTCTCCCTTCAAATTGAGCTCTGATTACAATGTTCTCAATTTCTCATTTCTCAGCTGTCCCTCCAATTTAAGCGCCTTCTCTCTGGTCCAGCCAATAACTTGTTTGGAATCGATGAGGTTTGATCATCATCACAACAAGAAGAGCAACGACAACGTTAACTATTCGGTGGTGGCAGTGTTGTCGGATCCACCGTTCCCGGTGCCGTGGACAGCGCCGTGTGAGGTGATATCGTGGGCTTTGATCCCTGTGATGGGTATGAGTATGACATGGCTGTTGTGGAACGATTACGAGTCAGATATAAAGTTGGAGTGGGCGAATCCTAATTGTGGAAGTTGTGCAGCGCGTGGAGGACGATGTGGTTTCCTTGAGCCAAGGTTTGGGGACACTTCTTTTCATGTCGGTTGTTACCATACTCCTACCCATGTTCAAGGTATTTCAAGGAAAGTCAAATACTTAGGTATAGGACTGGGAATATCAGGACTATTGTGTATAATTGGGTTAACATACTTTCTCTACGATAAGAAGCAGATATCTGAGCTGCATGAACAGCAGCAGCTGCAATCAAGAGCCACCACCATGAGCGGTGGCGGCGGTGGTGATCTTTTCACAATGAACGCAAGAGGCGATTTTTACACCTTAGTTTCGGCGGCGCGTCCTAATCCTGGTGGAGCAGAGAGTAAAAGGCTTCCAAAGCACAATGATAATGATAATGTGTGCGCAATATGCCTATGTGAGTACAAGGCCAAGGAGATATTGAGGGCAATTCCAGGGTGCAATCACTATTTTCATGCCCTTTGTATTGATGGATGGCTCAAGATGAATCCATCCTGCCCTTTGTGTCGCATGTTATTAACGCACACAACCCTTCCATTCAACCCGCCTTATCCTACCTATCCACCAACTCCTTAG 1275 0.4698 MASLPSFILLFLCSILVFGVADTIGHKVRCERTSCVKGGISIEFPFWLREGNETPNPWCGYPGFELSCTNTTGFSEPLVNLPGTGDFSVKFLSLEDQVVWINDPDECLANRIMRNRGLNLQGSPFKLSSDYNVLNFSFLSCPSNLSAFSLVQPITCLESMRFDHHHNKKSNDNVNYSVVAVLSDPPFPVPWTAPCEVISWALIPVMGMSMTWLLWNDYESDIKLEWANPNCGSCAARGGRCGFLEPRFGDTSFHVGCYHTPTHVQGISRKVKYLGIGLGISGLLCIIGLTYFLYDKKQISELHEQQQLQSRATTMSGGGGGDLFTMNARGDFYTLVSAARPNPGGAESKRLPKHNDNDNVCAICLCEYKAKEILRAIPGCNHYFHALCIDGWLKMNPSCPLCRMLLTHTTLPFNPPYPTYPPTP* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g3150 424 ProSiteProfiles Zinc finger RING-type profile. 361 403 IPR001841 -
Aev03g3150 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 407 IPR013083 -
Aev03g3150 424 Pfam Ring finger domain 360 403 IPR001841 -
Aev03g3150 424 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 404 - -
Aev03g3150 424 SMART ring_2 361 402 IPR001841 -
Aev03g3150 424 CDD RING-H2_PA-TM-RING 360 403 - -
Aev03g3150 424 Pfam Wall-associated receptor kinase galacturonan-binding 30 103 IPR025287 GO:0030247
Aev03g3150 424 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 10 404 - -
Aev03g3150 424 SUPERFAMILY RING/U-box 353 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g3150 Aev-Chr3 30020294 30023024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g3150 25 403 C3H Transcription Factor Family AT2G46495 26.963 1.55e-36 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g3150 - - lja:Lj4g3v3004070.1 342.043