Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g3096 ATGGGACACCATTCATGCTGCAACCAACAGAAAGTGAAGAGAGGCCTCTGGTCGCCCGAGGAAGACGAAAAACTCATCAGATACATTACTACTCACGGCTATGGCTGTTGGAGTGAAGTTCCTGACAAAGCTGGGCTACAAAGGTGTGGGAAGAGTTGTCGGCTGAGATGGATTAATTATCTGAGGCCGGACATCAGAAGAGGGAGGTTCACACCAGAGGAGGAGAAGTTAATTATTAGTCTTCATGGCGTCGTTGGCAACAGATGGGCACACATTGCAAGCCACTTGCCGGGAAGAACTGACAATGAAATAAAGAACTACTGGAACTCATGGATCAAGAAGAAGATCAGAAAGCCTAATTCTTCTTCTTCTTCACTGCTCTCTACCACCACCACCGCCGCCAATATTATTAATGCACAAAGTGTGCTTGATCACCATTCCCAGTTCAATTATATTCCCAATCAAGATACTCTTCTTCTACCACCAAAGCCACACCTTCAAGAACCCTTGTTCTCTTCCAATAATACAACATCATACCCTCTATTCATGTTCGACACAGGTTCCCTTGATGCCGCGACGGCAGACAACAATGTACATCAAATATTCCAACTAGAGTCTGTAGGATTGAGCTCTGACACGTGGAACATGAGCAGCCAGAGCCAAAACCAACAAGTTCATCATGAGGCACTAATTGCTGCTCCTTCAGGAGGATCAAGTGGTTTTAGTACAGTGGCTGTAGGATTGGACAGCACGAGTTATCTGCCAGCATTGGTAGAGAATAATAATAATGTGGCAAATAATAATATGATGGGTGAAGTAGTTGAGTGTTGTAGCAGGGAGGAGGAAGCATTGGAGTGTTTAGAGAGGCAAGAGTTGAATGCATGGATAGAAACTCAGCAACAACAGTGTCCTAGTTTTCTTTTCTGGGACACTACTAGTAGTGTTGTTGATCAAGGCCATATGGGAACAACAAAAACTACTACTACTACTCTTTCTCCTTTTCCTTTGTGA 1011 0.4411 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPDKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPNSSSSSLLSTTTTAANIINAQSVLDHHSQFNYIPNQDTLLLPPKPHLQEPLFSSNNTTSYPLFMFDTGSLDAATADNNVHQIFQLESVGLSSDTWNMSSQSQNQQVHHEALIAAPSGGSSGFSTVAVGLDSTSYLPALVENNNNVANNNMMGEVVECCSREEEALECLERQELNAWIETQQQQCPSFLFWDTTSSVVDQGHMGTTKTTTTTLSPFPL* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g3096 336 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aev03g3096 336 Gene3D - 6 66 - -
Aev03g3096 336 PANTHER MYB DOMAIN PROTEIN 55 1 335 - -
Aev03g3096 336 CDD SANT 69 112 IPR001005 -
Aev03g3096 336 CDD SANT 17 61 IPR001005 -
Aev03g3096 336 SMART sant 13 63 IPR001005 -
Aev03g3096 336 SMART sant 66 114 IPR001005 -
Aev03g3096 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aev03g3096 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aev03g3096 336 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aev03g3096 336 Gene3D - 69 137 - -
Aev03g3096 336 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aev03g3096 336 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aev03g3096 336 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Aev03g3096 336 PANTHER MYB TRANSCRIPTION FACTOR 1 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g3096 Aev-Chr3 29675704 29677680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g3096 1 310 MYB Transcription Factor Family AT1G63910 49.014 1.42e-95 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aev03g3096 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g3096 K09422 K02947 gmx:100803556 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g3096 03 29675704 29677680 Aev03g3096 03 29675704 29677680 ECH
Aev05g0994 05 6985107 6986854 Aev03g3096 03 29675704 29677680 PCT