Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g3049 ATGGCATTCAGCGGGACTCAGCAGAAATGCAAGGCTTGTGATAAAGTTGTTCACCTTGTGGAATCACAATCTGCAGATGGTTCTCTTTATCACAAGAACTGCTTCAAATGCATCCATTGCAATGGCCGTCTCTCGATAAGCAACTACTCATCGATGGAAGGTGCCTTGTACTGCAAGGCTCACTTTGAGCAGCTTTTCAAGGAAAATGGAGTCGCCATGGCCAAGAAATCCCTTTCCTCTGCAAAGCCACCGAGTGAGCTGGCCAAGCAACCAAGCAGACTGGCCTCCTTCTTCTCTGGGACTCAAGACAAATGTTCAGCATGCAAGAAAACTGTGTATCCATTGGAAAAGTTGACAGTGGAAGGTGAGTTTTACCACAAATCATGCTTTAGGTGCACACATGGAGGGTGTTTCCTGAACCCATCATCCTATGCTGCACTTGATGGATACCTTTACTGCAAGCCTCACTTCTCTCAGCTGTTCAAGGAGAAGGGTAGCTACAGCTATCTGTCCAAGACTGCTTCATTGAAGAAGCATGCAGAGGAGGACAAAGCAGAGGCAGAGCCACCAAAGGGAGACCAAGATGGTGATGCTCCTCCCACCACTCTGGAGCAATAG 618 0.479 MAFSGTQQKCKACDKVVHLVESQSADGSLYHKNCFKCIHCNGRLSISNYSSMEGALYCKAHFEQLFKENGVAMAKKSLSSAKPPSELAKQPSRLASFFSGTQDKCSACKKTVYPLEKLTVEGEFYHKSCFRCTHGGCFLNPSSYAALDGYLYCKPHFSQLFKEKGSYSYLSKTASLKKHAEEDKAEAEPPKGDQDGDAPPTTLEQ* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g3049 205 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Aev03g3049 205 Pfam LIM domain 105 160 IPR001781 -
Aev03g3049 205 Pfam LIM domain 10 65 IPR001781 -
Aev03g3049 205 Gene3D Cysteine Rich Protein 99 169 - -
Aev03g3049 205 Gene3D Cysteine Rich Protein 4 72 - -
Aev03g3049 205 MobiDBLite consensus disorder prediction 178 205 - -
Aev03g3049 205 SMART lim_4 104 156 IPR001781 -
Aev03g3049 205 SMART lim_4 9 61 IPR001781 -
Aev03g3049 205 MobiDBLite consensus disorder prediction 178 193 - -
Aev03g3049 205 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Aev03g3049 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 169 - -
Aev03g3049 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 97 130 - -
Aev03g3049 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Aev03g3049 205 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 191 - -
Aev03g3049 205 PANTHER OS06G0237300 PROTEIN 1 191 IPR045268 GO:0051015
Aev03g3049 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 71 - -
Aev03g3049 205 ProSiteProfiles LIM domain profile. 103 163 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g3049 Aev-Chr3 29370833 29372129 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Aev03g3049 LIM 3.2e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g3049 - K24413 gmx:100499865 303.138