Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g3009 ATGGCAGCCTTTCCTTTCCACCATTACCCCCCTTTTCTTGTTGACTCATCATCATCATTCTTCCCTCATAATAACAACAATACCAATTCTATTACTACCCCTTCTTCTTCTTCTCTTGAGGACCAAGCACATATAATAATGATAACCACAAATCATCACCATACTACTACCTGTTGTGTTGACCAAAGCTCCTCCAAGGTTAGCAGTTACACCACCACCACTACTACTACCGAGTACCCTTCTCCTAAACAAAATCATCAAAGCCCTGAGACCTCTATGGTTGTTGATGATAATAAGCTTGAATCCGCTGATGATCATGAACAAGTCACTCAGAACGTTGTTACTGCTCCTCCTATGGATAATAATAATAATAACAAGAAGAGGAAAACTACAAATGCTTCTAATTCCTTGATTACTAGCCCCCTATCCAAGGAGTCAAATACAACAGAAGGGAGAAGCAAGAAACAAAAGAAGAGCAATAGTATTGGTGGGGTTAAAGAAGAAAAGAAAAAAGGTGAAGAAGAGGCTCCAACAGGGTACATCCATGTTAGAGCAAGGAGGGGTCAAGCAACAGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGGGAGAAAATAAGTGAGAGGATGAAGGTGTTGCAGCGCCTTGTGCCAGGCTGTGATAAGGTTACCGGGAAGGCCCTTGTGTTGGACGAAATCATCAATTATGTTCAGTCCTTACAGAATCAAGTCGAGTTCTTGTCAATGAAGCTTGCATCCTTGAACCCTTTGTTCCTTGACTTAGCAATGGACATGGACAATCTCTTTGTTAGACCAGAACCAGATCAGAAACTAAATAGCAGCATACCATCATCATCATCTGCACCACAACAATGCAGCCCCAACTTGGCCACAGCGACAACAACATTTGCTGATACAACAGCCATGACCACCACCACTACTACTACTGCAAATGATTATTACCTTTTGGATTATTCATCATCTCCACTACTTTTTCTTCAAGGCCAGAGGTCAAATCTCTTCTCTGAGTATGGTCAATTCTGGGACGTAGAAGACCAACGACAAAAGCTTCCTCAACCATATGGATTCGGCAACAACTTATGTTCCCTAAATAATATTAATTAA 1122 0.4162 MAAFPFHHYPPFLVDSSSSFFPHNNNNTNSITTPSSSSLEDQAHIIMITTNHHHTTTCCVDQSSSKVSSYTTTTTTTEYPSPKQNHQSPETSMVVDDNKLESADDHEQVTQNVVTAPPMDNNNNNKKRKTTNASNSLITSPLSKESNTTEGRSKKQKKSNSIGGVKEEKKKGEEEAPTGYIHVRARRGQATDSHSLAERVRREKISERMKVLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASLNPLFLDLAMDMDNLFVRPEPDQKLNSSIPSSSSAPQQCSPNLATATTTFADTTAMTTTTTTTANDYYLLDYSSSPLLFLQGQRSNLFSEYGQFWDVEDQRQKLPQPYGFGNNLCSLNNIN* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g3009 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 255 IPR036638 GO:0046983
Aev03g3009 373 Pfam Helix-loop-helix DNA-binding domain 193 240 IPR011598 GO:0046983
Aev03g3009 373 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 370 - -
Aev03g3009 373 MobiDBLite consensus disorder prediction 148 196 - -
Aev03g3009 373 MobiDBLite consensus disorder prediction 107 147 - -
Aev03g3009 373 MobiDBLite consensus disorder prediction 276 293 - -
Aev03g3009 373 CDD bHLH_AtBPE_like 179 255 - -
Aev03g3009 373 MobiDBLite consensus disorder prediction 273 293 - -
Aev03g3009 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 239 IPR011598 GO:0046983
Aev03g3009 373 MobiDBLite consensus disorder prediction 71 95 - -
Aev03g3009 373 MobiDBLite consensus disorder prediction 71 196 - -
Aev03g3009 373 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 370 IPR024097 GO:0006355
Aev03g3009 373 Gene3D - 186 257 IPR036638 GO:0046983
Aev03g3009 373 SMART finulus 195 245 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g3009 Aev-Chr3 29126752 29129196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g3009 123 272 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 58.974 2.72e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aev03g3009 HLH 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g3009 - - gmx:100777509 305.834