Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g3002 ATGTCGGAAGCAAACAACATGACTTCTCCTATGGAAGAAAAAGAAATTAGAGATGAGGAGAAACACGTGGAAATTTGTTCTGCTTCATGGAACACAAACAACATCAACAATAGGTATGAACTTATGAGTCCTATGCTTCCTCAGGTGAATGAAGAATTATTGTACATGCATCTTAACAACACTAGCATCCAAAACCAAAATCAACCAGATCAAGTTCATAATCCATTCGTTGACTCCTCACCTTCATACCCACCAAATCCATCTATTTTCACCAACAACCTTGATCCTTCTTCTCAGCTAGGGCAATATTTTCCGCCTCAAAATCCCAAATTTTCTTCTCTTTCCAATGCCATCCCTAGCAACCCTTTAGGTGACAACGGTATTACTAATCCCCAGATGGGGCTTCTTGGGCTCTTCGGGGGGTTCAGTAACATGAACTCAAACAACATTTCGGGTTTGAGCTTTGATCTGAACTTGACGACATCAGCAACCACCATGAGTTTGATCCCAGATACTGCTGATATGCCAGGGTTTGGCCTCTCTCAGATTGCTCTTTCCAATTCGATTGGGAACAAGTGTAACATTATTATGAGACCCCTTGATTCTTTGCCTCTATCTGGTGAACAACCAACTCTTTATCAGAAGAGAGCAGCACAAAGGAAGAACAAGAAAGATAACGAGAGAGGAAAGGATGAAGTTGAGGAACAAGGGAGGAATGATAAGAAAAGGAAAATTTTGATCATGGATGGAGAAAGGGTTGAAGGTGGCAATGGATTGAACAATGATGATGTTGGTGATTCTAATCATGACATGCCTAATGATGGCAAGAAAATGTTGGAATTTGAGGGTGGTGGAAACAAAAACCCTGAAAATCTCACCGACATTGTCTTAACGGGCGCCACCAACGTGGATAAGAAAGGTGAGATGAGCGGGATGTCAGAACATTGCCAAAGGAACAAGCTCAAAGATAAACTCTACATGTTGAGATCTGTGCTTCCAACTATCACCAAAATGGACGAGACTAGTATCCTAGGTGATGCAATTGACTACATCAAAGGACTTGAGCAGAAGGTCAATGACCTTAACAACGAATTGCAGTCAATGCCTTCAGTGCCACATGCTACAAGCTTGGTCCCTATGAGTGCCACCACTCTGCCAAGCCGTGTGAATGAACCTCCAACTACTCAATTGCCAAGCCCCAATGCCCAACCTCCCAAGGTTGAGGTTGGGTTGTCGGAAGGAGGAGCTGTGAATATCCACATGGAATGTGATACCAAACCTGGTTTGCTGCTCTCAACACTAAGGACTTTGGATAGCCTTGGATTGGACGCTCAGCAGGGTGTTCTCAGCTTTTTCGATGGATTTATTTTTGATGTTTTTCACGCTGAGCAATGCAATGAAGGTCAGAATCTCCGTGCAGAGCAAATCAAGGCAGCACTTATGAAAGTTGCTAGCTCCTCCGACCCCGACATGATCTAG 1479 0.4341 MSEANNMTSPMEEKEIRDEEKHVEICSASWNTNNINNRYELMSPMLPQVNEELLYMHLNNTSIQNQNQPDQVHNPFVDSSPSYPPNPSIFTNNLDPSSQLGQYFPPQNPKFSSLSNAIPSNPLGDNGITNPQMGLLGLFGGFSNMNSNNISGLSFDLNLTTSATTMSLIPDTADMPGFGLSQIALSNSIGNKCNIIMRPLDSLPLSGEQPTLYQKRAAQRKNKKDNERGKDEVEEQGRNDKKRKILIMDGERVEGGNGLNNDDVGDSNHDMPNDGKKMLEFEGGGNKNPENLTDIVLTGATNVDKKGEMSGMSEHCQRNKLKDKLYMLRSVLPTITKMDETSILGDAIDYIKGLEQKVNDLNNELQSMPSVPHATSLVPMSATTLPSRVNEPPTTQLPSPNAQPPKVEVGLSEGGAVNIHMECDTKPGLLLSTLRTLDSLGLDAQQGVLSFFDGFIFDVFHAEQCNEGQNLRAEQIKAALMKVASSSDPDMI* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g3002 492 MobiDBLite consensus disorder prediction 384 405 - -
Aev03g3002 492 PANTHER BHLH TRANSCRIPTIONAL FACTOR 86 485 - -
Aev03g3002 492 MobiDBLite consensus disorder prediction 214 244 - -
Aev03g3002 492 MobiDBLite consensus disorder prediction 218 244 - -
Aev03g3002 492 Pfam Helix-loop-helix DNA-binding domain 314 355 IPR011598 GO:0046983
Aev03g3002 492 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 305 354 IPR011598 GO:0046983
Aev03g3002 492 Coils Coil 344 364 - -
Aev03g3002 492 SMART finulus 311 360 IPR011598 GO:0046983
Aev03g3002 492 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 86 485 - -
Aev03g3002 492 Gene3D - 302 370 IPR036638 GO:0046983
Aev03g3002 492 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 374 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g3002 Aev-Chr3 29072478 29074679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g3002 174 463 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 42.140 1.04e-52 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aev03g3002 HLH 0.00025 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g3002 - - ahf:112732910 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g3002 03 29072478 29074679 Aev08g2454 08 23418639 23422407 PCT