Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2996 ATGCCATTGCCCTTTCAAATGGTGGATCAGAGGGGAATTTCTGCTTCATCTCATTTTTTTGATGACATTTCATTTCGTTCTTCTGAGAGGGATGTTGGATTCCGGAAGTCAAAATCCATTCATGACCAATTCCCACAAGGAAAAAATGGAATGGCAGCATCACCTGGAAGCTTCTTAAATGCTTTATCACCACTTGAAATAAATGCAAAATCTAGCTTGCCAATGTCACAGACTAGTGTATCCATGGCAAGTATAGAAAAGCAACATTTTGGTGGAGAAGAAGGCATTGTTGGTGTGTTGAATGATTCCAAGGGATCATCACATTATCATCATCGCAGATCGTGGTCTGATGTATGTATGCATCCAGCAACTAACTCATCTGGTTTGATTGTGAACAAGATCATTGCCAGTGCTGCCCCTTGTGAAAGTAGTTTATTCTCAAGCTCACTGTCTGATATGTTTAGCCAAAAGTTAAGGCTATTGGGGAATGGTATACTGTCTGATAAGTCCGCTGCTATCGGTTCCCTTCCAGAGGAAGAACCTTATAAATCTCTTGAAGAAATGGAGGCTGAAACTATAGGAAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTGACTGGTGAGTTAGGATACAGTACTCGTGCCAGAACAAATGATGACTTGGAAGATTTTGATTTATTTAGCAGTGGTGGAGGCTTGGAGCTGGAAGGAGATGAACACATGAATTCAGCCATAAGAACTAGTGGTCTGGATGGAGATTCTATTTTCTTTGGAGGGTCTAAAGGAAAGTTTCCTTTTGTTGAACAACCTTCTAGAACACTCTTTGTTAGAAACATTAATAGCAATGTTGAAGACTCTGAGCTAAAGGATGTCTTTGAGCAATATGGAGATATAAGAACCATTTATGCAGCCTGTAAGCATCGTGGGTTTGTTATGGTTTCTTATTATGATCTAAGGGCTGCACAAAATGCAATGCAAGCACTTCAAAATTGGCCATTGAGGTCAAGGAAACTTGATATACATTATTCAATTCCAAAGGTCAATTCTCCGGAGAAGGATATTGGCCATGGTACGCTGATGCTATCTGGTCTTGATTCATCTGTTTCAAATGATGAACTCAAACAGATCTTCGGATTCTATGGAGAAATTAAAGAAATCTATATTCATCCTGAAATAAATCACCACAGATTTATAGAGTTTTACGATGTGCGAGCTGCAGAAGCTGCTCTTCGTGCATTGAACAGGATTGGCATTGCTGGGAAACAGATCAAGCTTGAACCCGCCCACCCTAGTATGATGCAGCAGTCTCGTAAGGGTCAAGATGAACCAGATCTTGGTCAAAGTCTTGACAACTTATCGTTGAGACAAAAGGCAACTCTACCTTCTGGAGTAATTGGATCTGCGTCCTTGGAAAACGGATATACTCAGGGATTCCAATCTGCAATGGGGCAACCTTTGAATGCATTTACAGCTGATAATTCATTCTATCTTATGAATTCTAGCATTCACAACACATTGAGAGGGGCGTCTGTGGCAAAAGTTTCTGGTGTTTCGGATTCCGGTAACTTTGTTGATTCAATGAAATTTGCATCTAGTCAGAGATTTCATCCTCATTCCTTGCCTGAGTATCATGATTCCCTGGCCAATGGTAGTCCTTATAAATTCTCAAGCACCATTAACAAAATACCTACCACTATTGGTAATGGTGTGACAGAAGCCTCTGATGGCAGGCACATTCAGGGAATAGGCTCAACTGGGAACGTAGTAGAATTTAATGCTGGAGGAAATGGGATCCGCCCACATCATGGACTTTATAACATGTGGAACAATTCCAATTTGCATCAGCAACCTTCATCAAGCACCATGCTTTGGCAGAAAACACCATCATTTGTGAATGGTTCTTCTTCTCCGGGCCTTCAACATATGGCAAACTTCGCTAGAACACCACCTCATTTGTTGAGGACAGCACATATGGACCATCATGTTGGATCAGCACCTGTGGTTACAGCCTCACCCTGGGAAAGGCGACATTCTTACTTGGGAGAGTCTCCTGAATCTTCTGGTTTTCACTTGGGCTCTCTTGGAAGTGGAGGTTTTCATGGCTCCTGGCAATTGCATCAACCAGAATTTTCTTCCATGTTTTCTCATGGTAATGGCACTGAACTGGCGTCAAATGCTGGGCAGAATTCTCCTAAGCAGTTATCACATGTTTTCCCTGGGAGACATCCGATGACTTCAATGTCAAAATTTGATTCTGCCAATGGAATGAGAAATATTTATCACCGTAGAAGTGAATCAAACCCTAACAATGCTGATAAAAAACAATTTGAGCTCGACCTTGGTCGCATATTGCGTGGGGAAGACAGCAGAACAACACTAATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGCCGGGGAACTTATGATTTTCTGTATTTACCAATTGACTTCAAGAACAAATGCAATGTCGGCTATGCATTCATAAATATGATCGATCCTAGACAAATTGTTCCATTCCACCAGGCTTTTGATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTAGCCTCGCTTGCATATGCCAGAATTCAAGGAAAAACTTCTCTTATTGCTCACTTCCAGAACTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTCCACACAGATGGTCCAAATGCTGGTGATCCGGAGCCTTTCCCTATGGGTTCCAATATTAGAGTGAGACTGGGGAAATCTCGCACCGCTAGTTTTGACGATAATCGCGGCCAAGGGGGTCCTTCGTTTTCGACTAATGGAGAAGATTCTGCTAATGGAGTTGACTCTTCAAAAAACTGA 2889 0.4154 MPLPFQMVDQRGISASSHFFDDISFRSSERDVGFRKSKSIHDQFPQGKNGMAASPGSFLNALSPLEINAKSSLPMSQTSVSMASIEKQHFGGEEGIVGVLNDSKGSSHYHHRRSWSDVCMHPATNSSGLIVNKIIASAAPCESSLFSSSLSDMFSQKLRLLGNGILSDKSAAIGSLPEEEPYKSLEEMEAETIGNLLPDEDDLFSGVTGELGYSTRARTNDDLEDFDLFSSGGGLELEGDEHMNSAIRTSGLDGDSIFFGGSKGKFPFVEQPSRTLFVRNINSNVEDSELKDVFEQYGDIRTIYAACKHRGFVMVSYYDLRAAQNAMQALQNWPLRSRKLDIHYSIPKVNSPEKDIGHGTLMLSGLDSSVSNDELKQIFGFYGEIKEIYIHPEINHHRFIEFYDVRAAEAALRALNRIGIAGKQIKLEPAHPSMMQQSRKGQDEPDLGQSLDNLSLRQKATLPSGVIGSASLENGYTQGFQSAMGQPLNAFTADNSFYLMNSSIHNTLRGASVAKVSGVSDSGNFVDSMKFASSQRFHPHSLPEYHDSLANGSPYKFSSTINKIPTTIGNGVTEASDGRHIQGIGSTGNVVEFNAGGNGIRPHHGLYNMWNNSNLHQQPSSSTMLWQKTPSFVNGSSSPGLQHMANFARTPPHLLRTAHMDHHVGSAPVVTASPWERRHSYLGESPESSGFHLGSLGSGGFHGSWQLHQPEFSSMFSHGNGTELASNAGQNSPKQLSHVFPGRHPMTSMSKFDSANGMRNIYHRRSESNPNNADKKQFELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPRQIVPFHQAFDGKKWEKFNSEKVASLAYARIQGKTSLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGSNIRVRLGKSRTASFDDNRGQGGPSFSTNGEDSANGVDSSKN* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2996 962 Gene3D - 268 356 IPR012677 -
Aev03g2996 962 SUPERFAMILY RNA-binding domain, RBD 271 432 IPR035979 GO:0003676
Aev03g2996 962 CDD RRM3_MEI2_like 795 880 IPR034454 -
Aev03g2996 962 MobiDBLite consensus disorder prediction 429 450 - -
Aev03g2996 962 SUPERFAMILY RNA-binding domain, RBD 794 878 IPR035979 GO:0003676
Aev03g2996 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 359 432 IPR000504 GO:0003723
Aev03g2996 962 MobiDBLite consensus disorder prediction 435 450 - -
Aev03g2996 962 MobiDBLite consensus disorder prediction 716 737 - -
Aev03g2996 962 CDD RRM1_MEI2_like 273 348 IPR034453 -
Aev03g2996 962 PANTHER RNA RECOGNITION MOTIF-CONTAINING 4 957 - -
Aev03g2996 962 MobiDBLite consensus disorder prediction 934 962 - -
Aev03g2996 962 Gene3D - 357 451 IPR012677 -
Aev03g2996 962 MobiDBLite consensus disorder prediction 928 962 - -
Aev03g2996 962 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 4 957 - -
Aev03g2996 962 MobiDBLite consensus disorder prediction 716 751 - -
Aev03g2996 962 MobiDBLite consensus disorder prediction 903 922 - -
Aev03g2996 962 SMART rrm1_1 794 870 IPR000504 GO:0003723
Aev03g2996 962 SMART rrm1_1 360 428 IPR000504 GO:0003723
Aev03g2996 962 SMART rrm1_1 275 343 IPR000504 GO:0003723
Aev03g2996 962 Pfam RNA recognition motif 2 792 888 IPR007201 -
Aev03g2996 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 361 426 IPR000504 GO:0003723
Aev03g2996 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 276 340 IPR000504 GO:0003723
Aev03g2996 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 274 347 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2996 Aev-Chr3 29022127 29027603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2996 272 442 Eukaryotic Initiation Factors Gene Family AT1G71770 25.773 2.62e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2996 - - gmx:106798747 1400.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g2996 03 29022127 29027603 Aev08g2461 08 23502777 23508826 PCT