Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2901 ATGAGTGGAAGTGGCAGAAAGCTCTCTTCAAAGAGGGAATTGAGAGATGAACCTGGATTTGCAAGGCGCAGTCGGAGCAGGAGCCCTGCAAGGAGCAGGAGCCCTGCAAGGAGCAGGAGCCCTGCAAGGAGCAGGAGCCCTGCAAGTAGTTTCAGGTGGGATCCAGGATACAACGAAAGAAAAAGAATGAGGGCTGGAGGATCGACAAAACCATGTAGAGATTTTGCTGTTGGAAAATGCAGGAGAGGCAGCCATTGCTATTTCCTTCATGATGATGATCATATTTATGAGGATGGCTGGGAAAGTAGACACAGGCAAGATGGACCTCCTGGATACTCTGCTCCCCGTGAGAGTGGGGACTATTCCCTTAGGAGTGGAAGATCCGCCGAAGCTTGTACTCATTTTGCAAAAGGAAGGTGTAGGTTGGGAGCATCATGCAAGTTTGTGCATCAGGACAGTTCTGATGGATTCAACGCATCTTCTGAATCAATCAGAGAAAGGGAAATTGATAGAAGGCGGGGTGGTGGGCATGGTCCAAACCACAGTGTTGATATTCCTTGCAAATTTTTCGCTTTTGGAAATTGTCGCAATGGTAATCATTGCAGGTTTTCCCATGATAGGCAAGCATGTAAGAGCCCCAATAGAAGATCAAGGGATGATATCTTGAGGAGTGTTAAAGGTGGAGATCATGCATTGAACTTGCCGAAATTGAATGATTCAATTAATCCTGATGGAAGGCTAAAAGATGATAGAAGGGGTTTAGGAAGCAATATGGCTGATGTAGATCAAGTTTGGGACGGTCCAAAACAGTGTGATTTTGTTTCAGTCTTTGATACAGCAAAGGGGGTTGAGGACAACAGAAATGAAATTATGGGTGCCGCAACACCTGAATTCACTGGTTGGCCATATTCTGTTGGATGGGATCACAGTTCAGATAAGAACATAGAGCATGGTGAATCACCATTCTCAGTTGATAAGAAGGAAACCAAATTTTTGGAGGCAGAAAATGCTGGAGGGTTAAGTACAGAAATTTGGCCAGGGGATGAAAAAATGTCTCCTGATTGGAATCATGGTGTGATATCTTCCTGCCACATTGAAGAGAAACATGAACAGAATAAGCAACAAGTTCTTCCAGGACAAGAACTTCAACAGAATGCTCAGAATCCAATTGCTTTGCATTCTTCAAGCGGTCATGTGTCTGGGCAAAGTCATGTGGCAGTTTCAGTCATTCCTCCAAGAGTAGGTAGTGTTGAAGGCATGCAGAACCAGGAAATCTCTACTGAGAAAAAGTACTCTGGTGTGCCCAATAACATCGAAGCAAAACTGTTGCAAGTTGGTTCAAGAAATTCTTCAACTCAGAGCATGGTGAGCAAAGAACAGCTTGCTCAACTAACCAGCATCTCAGCTTCTCTGGTGCATATTCTTGGTTCAGTTCGGCAGCTTCCAACACTTCATGCCACATTAAATTCTCATGATGCAAAGGATACTCCCTCCCTCGGCAAAACCGAAGGGTCAATTAAGCCTCTTTTTCCAGCACTCATCAAGTCAGATCCTGCTGCTGGATTACAGAAGCGGCATGTTCCAATATGTGCCAGCGTTGAACCAATAAACGCCAATGCGAGTGTGGTTCACCAATACTTTTCTCCAATTAAAAGAATTACAGATGATGCAACAGAAATTCCACCACTGTTGTCTAACTTGGGCAGGCAAAATCTTGATGATTCTTGTAAAACAGCATTTTCCGAAAAACAGCCTATCAAGGGTGACCATTACATTGAGGTCAATAAGGAGAAAGACATTGCAGTAACTGAAGAAAGGAAAAGTTCTCAATGTGCCAATGAAATTACAAAAGAGGATAGTCCTTTGGAGAATGAGGACCAAAAAGATGAACCTGATGAGTCCAAGAAAACAAAGGATGCCAAGGGTATTCGTGCATTTAAACATTCATTGGTGGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTAAAATCAACAAGGACGATTATAAATCAATTGTGAAGAAAGTTGCTGATAAAGTAACTAGCACGGTCCAGCGGGCACAGATTCCTCAGACACAGGAGAAAATTGATGATTACTTATCATTGTCGAAACCAAAGCTTAGCAAGCTTTTACAGGCATATGTGGAGAAGGTTCAGAAGGCATAG 2175 0.4331 MSGSGRKLSSKRELRDEPGFARRSRSRSPARSRSPARSRSPARSRSPASSFRWDPGYNERKRMRAGGSTKPCRDFAVGKCRRGSHCYFLHDDDHIYEDGWESRHRQDGPPGYSAPRESGDYSLRSGRSAEACTHFAKGRCRLGASCKFVHQDSSDGFNASSESIREREIDRRRGGGHGPNHSVDIPCKFFAFGNCRNGNHCRFSHDRQACKSPNRRSRDDILRSVKGGDHALNLPKLNDSINPDGRLKDDRRGLGSNMADVDQVWDGPKQCDFVSVFDTAKGVEDNRNEIMGAATPEFTGWPYSVGWDHSSDKNIEHGESPFSVDKKETKFLEAENAGGLSTEIWPGDEKMSPDWNHGVISSCHIEEKHEQNKQQVLPGQELQQNAQNPIALHSSSGHVSGQSHVAVSVIPPRVGSVEGMQNQEISTEKKYSGVPNNIEAKLLQVGSRNSSTQSMVSKEQLAQLTSISASLVHILGSVRQLPTLHATLNSHDAKDTPSLGKTEGSIKPLFPALIKSDPAAGLQKRHVPICASVEPINANASVVHQYFSPIKRITDDATEIPPLLSNLGRQNLDDSCKTAFSEKQPIKGDHYIEVNKEKDIAVTEERKSSQCANEITKEDSPLENEDQKDEPDESKKTKDAKGIRAFKHSLVEFVKELLKPTWKEGKINKDDYKSIVKKVADKVTSTVQRAQIPQTQEKIDDYLSLSKPKLSKLLQAYVEKVQKA* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2901 724 Pfam RNA-binding, Nab2-type zinc finger 71 90 - -
Aev03g2901 724 SMART c3hfinal6 126 152 IPR000571 GO:0046872
Aev03g2901 724 SMART c3hfinal6 68 92 IPR000571 GO:0046872
Aev03g2901 724 SMART c3hfinal6 181 207 IPR000571 GO:0046872
Aev03g2901 724 MobiDBLite consensus disorder prediction 8 24 - -
Aev03g2901 724 MobiDBLite consensus disorder prediction 33 47 - -
Aev03g2901 724 Gene3D - 177 273 - -
Aev03g2901 724 MobiDBLite consensus disorder prediction 603 641 - -
Aev03g2901 724 MobiDBLite consensus disorder prediction 161 178 - -
Aev03g2901 724 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 22 722 - -
Aev03g2901 724 Gene3D - 66 154 - -
Aev03g2901 724 ProSiteProfiles Zinc finger C3H1-type profile. 66 93 IPR000571 GO:0046872
Aev03g2901 724 ProSiteProfiles Zinc finger C3H1-type profile. 126 153 IPR000571 GO:0046872
Aev03g2901 724 MobiDBLite consensus disorder prediction 1 73 - -
Aev03g2901 724 MobiDBLite consensus disorder prediction 156 178 - -
Aev03g2901 724 Pfam CCCH-type zinc finger 186 206 IPR041367 -
Aev03g2901 724 ProSiteProfiles Zinc finger C3H1-type profile. 186 208 IPR000571 GO:0046872
Aev03g2901 724 SUPERFAMILY CCCH zinc finger 184 206 IPR036855 GO:0046872
Aev03g2901 724 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 150 IPR000571 GO:0046872
Aev03g2901 724 MobiDBLite consensus disorder prediction 100 120 - -
Aev03g2901 724 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 22 722 - -
Aev03g2901 724 SUPERFAMILY CCCH zinc finger 127 151 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2901 Aev-Chr3 28349712 28353872 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aev03g2901 zf-CCCH_4 7.9e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2901 - K22909 gmx:100783856 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g2901 03 28349712 28353872 Aev03g2901 03 28349712 28353872 ECH
Aev03g2901 03 28349712 28353872 Aev08g0596 08 3411880 3419515 ECH