Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2894 ATGGTCAGAGACGATCTATACATAACGGTTCCCAGCTTCTTCCGGTGTCCTATATCACTCGACGTCATGAAATCCCCTGTCAGCCTCTGCACCGGCGTTACCTACGACCGCTCCAGCATCCAACGCTGGCTCGATAACGGAAACAACACCTGCCCCGCCACCATGCAGGTCCTACAAACCAAGGAATTTGTCCCCAACCGCACCTTGCAGAGGCTTATCCAGATCTGGTCTGAATCGCTCCGTCACCGAGTCGACTCGCCCGAGTCTCCCTCCGATACCGATTCGGTCGTTTCCAAGGATCAGGTTCTCTCCGCCTTCGCCGCCTTGGAGTCCCGCGCCGAGGAACGGTCCGAATCGCTCGCGAGAATCGTGCGTTTCGCGCGAGATTCCGAAGAGAACCGCGATTTTCTCGCGAGAATGGAAGGCTTTGTTCCTGCGCTGGTCAATTTCCTCCACAATGCCGATAACGGAGAGCGGCGCAGCGTCGAATTTCTCGAGCAGGTGGTTGCGGCGTTGGATTTGGTTCTTGGTGAAATCAAAGACCGCGAAGCCTTGAAAAATTCGATGCTCAAGAACCAGAGCCAGAGCAGTCGCAGTTCCTTGGATTCTCTGCTCCTCGTCCTACAAGAAGGAAGCTCCGATTCGAGAGTCGCTTCAGCCAAGGTTTTGCAATCCCTCGCCATGGACTCCGAATCGAAGCTCTTGATTGCGGAAAAAGAAGGCATAGTCTCGGAATTACTCAGCCTAATCACGACGAACAAAGATCCGGCGGTGATCGAGAGCAGCTTGTCGTGCCTGGTGGCGATCTCGTCGGCGAAACAGAACAAGGCGAAGCTTGTGCACCTCGGAGCCGTGAAGGCGTTCTCGAAGCTTCTTTCGGAATCAAACCTGAGCGCCTCAGTGGCAGAGAAAGTGCTAAAGCTGCTCGAAACGGTGTCGTCGACGAAGGAAGGGAGGACGGAGATATGCGAGGACACGCAGTGCGTGCCGGCGATACTGAACAAGGTGCTGAAGGTGTCGAGCGTGGCGACGGAGCATGCGGTGACGACTCTGTGGAGCGTGTGCTATCTGTTTCGCGATCAGATGGCGCAAGAAGCGGTTACTAAGGCCAATGGTTTGACCAAGATTCTGTTACTGATGCAGAGCAATTGCTCACCCCCTGTGCGCCAAATGTCTGCAGATTTGCTCAAGATTTTTAGGGTTAATTCCAAGTCCTGTCTTTCTTGCTATGATACCAAGACCACACATATCATGCCCTTTTGA 1263 0.54 MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLQTKEFVPNRTLQRLIQIWSESLRHRVDSPESPSDTDSVVSKDQVLSAFAALESRAEERSESLARIVRFARDSEENRDFLARMEGFVPALVNFLHNADNGERRSVEFLEQVVAALDLVLGEIKDREALKNSMLKNQSQSSRSSLDSLLLVLQEGSSDSRVASAKVLQSLAMDSESKLLIAEKEGIVSELLSLITTNKDPAVIESSLSCLVAISSAKQNKAKLVHLGAVKAFSKLLSESNLSASVAEKVLKLLETVSSTKEGRTEICEDTQCVPAILNKVLKVSSVATEHAVTTLWSVCYLFRDQMAQEAVTKANGLTKILLLMQSNCSPPVRQMSADLLKIFRVNSKSCLSCYDTKTTHIMPF* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2894 420 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 420 - -
Aev03g2894 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 87 IPR013083 -
Aev03g2894 420 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 283 322 IPR000225 GO:0005515
Aev03g2894 420 Pfam U-box domain 10 79 IPR003613 GO:0004842|GO:0016567
Aev03g2894 420 SUPERFAMILY ARM repeat 113 406 IPR016024 -
Aev03g2894 420 CDD RING-Ubox_PUB 14 56 IPR045210 -
Aev03g2894 420 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Aev03g2894 420 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Aev03g2894 420 SMART arm_5 229 271 IPR000225 GO:0005515
Aev03g2894 420 SMART arm_5 272 314 IPR000225 GO:0005515
Aev03g2894 420 SMART arm_5 130 177 IPR000225 GO:0005515
Aev03g2894 420 SMART arm_5 360 401 IPR000225 GO:0005515
Aev03g2894 420 Gene3D - 187 295 IPR011989 -
Aev03g2894 420 Gene3D - 296 399 IPR011989 -
Aev03g2894 420 PANTHER WDSAM1 PROTEIN 4 420 IPR045185 GO:0061630
Aev03g2894 420 SUPERFAMILY RING/U-box 5 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2894 Aev-Chr3 28307172 28308434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2894 1 420 U-box Gene Family AT5G64660 52.914 9.64e-148 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2894 - - gmx:100799627 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g2894 03 28307172 28308434 Aev03g2894 03 28307172 28308434 ECH
Aev03g2894 03 28307172 28308434 Aev08g0602 08 3455371 3456615 PCT