Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2888 ATGTACGCTTCTACTTCCTTTACTTCACACCTGATTCATGACCTTGTTGTGGATCATTTTCCCTCAAGAAGGTTACTCCTTGAAAACCCACTTCACCAAACCCCAAATTCCCCACCATCCACCACCCACAACAATAATTCAACAGACTTGTACCTCGGAGATGCCACCTTCGACGCAAATGTCGTCATGGTACTCTCTGTTCTGCTCTGTGCTCTGATTTGCTCGCTTGGATTGAACTCAATCATAAGGTGTGCCTTAAGGTGCTCAGATCTCGTGATCAATGACCCTTCATCCTCCTCCAGCAGCAGCAGCAACACCACTTCGTCTCGATTGGCCAACACAGGAATCAAGAAGAAAGCCCTCAAAACTTTTCCAACCATAAACTACTCAAGTGAGTTGAAATTGCCAGGATTGGACACAGAGTGCGTCATATGCCTCTCGGAATTCTCTAATGATGAGAAAGTGCGCATTCTGCCCAAATGTAACCACGGTTTCCACGTTCGCTGCATTGACAAGTGGTTGAGTTCACACTCATCTTGCCCCAAGTGTAGGCAGTGCCTCATTCACACTTGCCAAAAGATTGTTGGAACACAACCGCCGCCGCCGCCACCGGCTGCGGTGATGCCTGTGCCGGAAATCGTTATAAGGATTGAACCACTAGAGCCAGAGAGTATGGTGCGTACCTACAGAGAAATATAA 699 0.4764 MYASTSFTSHLIHDLVVDHFPSRRLLLENPLHQTPNSPPSTTHNNNSTDLYLGDATFDANVVMVLSVLLCALICSLGLNSIIRCALRCSDLVINDPSSSSSSSSNTTSSRLANTGIKKKALKTFPTINYSSELKLPGLDTECVICLSEFSNDEKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIHTCQKIVGTQPPPPPPAAVMPVPEIVIRIEPLEPESMVRTYREI* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2888 232 PANTHER RING-H2 FINGER PROTEIN ATL78 1 232 IPR044602 GO:0016567|GO:0016740
Aev03g2888 232 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Aev03g2888 232 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 232 - -
Aev03g2888 232 SUPERFAMILY RING/U-box 120 189 - -
Aev03g2888 232 Pfam Ring finger domain 141 184 IPR001841 -
Aev03g2888 232 CDD RING-H2_PA-TM-RING 141 184 - -
Aev03g2888 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 188 IPR013083 -
Aev03g2888 232 SMART ring_2 142 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2888 Aev-Chr3 28251879 28252577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2888 24 188 C3H Transcription Factor Family AT3G10910 49.398 3.34e-47 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2888 K19040 - gmx:100780127 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g2888 03 28251879 28252577 Aev08g0607 08 3479119 3479787 PCT