Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2879 ATGGATTTGGATGATTTCCGATCCATATTGGACACAGCCGGCGTCGACGTTTGGGTTTTCATCGACGCCGCTATCGACGTCGCTTCCGCCGATTTCGGCGGCGAATTCAAGCGTCGGAGGGACCGAATCGTGGAGCGCATTTACGCCGCAACTACGACTCCTCCTCCTCCGCCGCCGCCGCGCCGGAATAGCGAGGCCACTGATGGAAGGATTGAGAAACGAAACAATACCTCAATGGAAGAGGAGGAGGAGGAGGAGGAGGAGCTGGATCCTTTCGGAGGGTTGTTCGATGACGAGCAGAAGAAGATTCTAGAAATTAAGCAGCAACTCGAAGACCCTCACCAGTCCGAAGATTCCTTGGTGGAGTTGCTACAGAATCTTGCGGACATGGATATTACATTCCAAGCGTTAGAGGAGTCTGACATTGGGAGGCACGTGAATCGGTTGCGGAAGCATTCCTCCAATGAAGTTCGGAGATTGGTGAAGCTTCTTGTCAGAAAGTGGAAGGAAATTGTAGATGAATGGGTGAAGTTCAAGGCACCGGGAGAACCCGCCACTCTCATTGTAGATGATGAAGACTCCCCTCAGCAGAAAACCCCACAAAAGATTCCTGATTTTGGGTACTCTCCAAATCCACACAATGGGAATTTTGGATCAGAGCGCAACAGCTCAGAAGCTGAACCAAAACCTAAAGCAGTGCCTCGCAGAGAAGCTCCTCCAAAACCAGCTCCATCACCATCAGTTCCTACTCCTCCTCCTGCACCTCAAAACAGACAGAGAGAGAGCAATTTTGACTCGGATAGACTAGCTTCAGCAAGCAAACGCCTTCAACAGAACTACAAAGAGGCTGCAAATGCGAAAAAGCAAAGAAAGATTCAGGTGATGGACATGCGTGAGTTACCAAAACCCAAGAATGCCTTCTTTGCAAAGAACAAAGGCGGCATTGGTTCTCAGGGAAGGCAGTGGTGA 969 0.5015 MDLDDFRSILDTAGVDVWVFIDAAIDVASADFGGEFKRRRDRIVERIYAATTTPPPPPPPRRNSEATDGRIEKRNNTSMEEEEEEEEELDPFGGLFDDEQKKILEIKQQLEDPHQSEDSLVELLQNLADMDITFQALEESDIGRHVNRLRKHSSNEVRRLVKLLVRKWKEIVDEWVKFKAPGEPATLIVDDEDSPQQKTPQKIPDFGYSPNPHNGNFGSERNSSEAEPKPKAVPRREAPPKPAPSPSVPTPPPAPQNRQRESNFDSDRLASASKRLQQNYKEAANAKKQRKIQVMDMRELPKPKNAFFAKNKGGIGSQGRQW* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2879 322 CDD TFIIS_I 100 173 - -
Aev03g2879 322 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 101 180 IPR035441 -
Aev03g2879 322 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 322 - -
Aev03g2879 322 MobiDBLite consensus disorder prediction 303 322 - -
Aev03g2879 322 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 322 IPR044790 -
Aev03g2879 322 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 97 183 IPR035441 -
Aev03g2879 322 SMART TFS2_5 103 174 IPR003617 GO:0005634
Aev03g2879 322 MobiDBLite consensus disorder prediction 79 93 - -
Aev03g2879 322 Coils Coil 120 140 - -
Aev03g2879 322 MobiDBLite consensus disorder prediction 186 270 - -
Aev03g2879 322 Coils Coil 269 289 - -
Aev03g2879 322 MobiDBLite consensus disorder prediction 47 94 - -
Aev03g2879 322 ProSiteProfiles TFIIS N-terminal domain profile. 98 175 IPR017923 -
Aev03g2879 322 MobiDBLite consensus disorder prediction 237 256 - -
Aev03g2879 322 Pfam TFIIS helical bundle-like domain 123 172 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2879 Aev-Chr3 28212860 28214728 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Aev03g2879 Med26 6.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2879 - - gmx:100796457 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g2879 03 28212860 28214728 Aev03g2879 03 28212860 28214728 ECH
Aev03g2879 03 28212860 28214728 Aev08g0615 08 3528812 3530911 ECH
Aev03g2879 03 28212860 28214728 Aev08g0615 08 3528812 3530911 PCT