Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2873 ATGGACTTCGACGAGTACGAGTATTTGGAGAAGACAGTTGAGGAGCACGACGACAAAGACTCCTCCAAGTCCAAGAAGAAGGACTCCGCCGACAGGTCTTACCGTAAGCGCGACGTCGACGACGATCTCGACGCCGCCGCCGATGACAAGCGCAGCAAGAGGTCCAGGCCTGACGACGACAATGGCTCCAAGAAGGACCGCGACCGTGACCGTGACCGTGACCGCGACCGCGACCGCTCGAGCCGTGATAGGGAGCGCCACCGGAGCGAGAGGGAGAGGGACGGGGAGAGAAGCAGTAGAGAGAAAGAGAAGGAGAGGGATAGGGATAGGGATAGAGAGAAGAGGGATAAGGATGGGGATAGGGATAGAGATAAGGAGCGGAGAGATAGGGATAGGGATAGGGAAAAGGAACGAGAGAGAAGGGAGAAGGAGAAGGAGAGAGAGAGGGAGGAGAGGGATAGATCCAGGAGGAGCAGGAGTCGTTCCGAGAGAGACAGAGATAGAGAAAGAGAACGGGATTTCGAATCACGTGATGGCCGGAGGTTTAGGGATAAGAAAGAGGCTGCAGAGCCTGAGGCAGATCCAGAGCGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCCTTAAAAGCAACAGAGAGAGATGTGTATGAGTTCTTTTCAAAAGCTGGCAAGGTGAGAGATGTTCGTCTGATCATGGATAGGAACTCGAGACGTTCTAAAGGAGTTGGGTATATTGAATTTTATGATGTGATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTCGGGCAACCTGTAATGGTGAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCTAATGCTTCCAGTGGAGCTGCTGGTGTAGCAGGACCATATGGTGCTGTGGACAGAAAACTGTATGTGGGGAACCTTCACTTCAACATGACTGAGAGTCAGCTGCGAGAGATTTTTGAGCCATTTGGTCCGGTGGAGGTTGTACAGCTGCCTCTTGACTTGGAGACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTGCCCATCTCGAACATGCCAAGGCAGCCCAGAGTTTAAATGGAAAACTTGACATTGCTGGCAGGACTATTAAGGTTTCATCTGTAACTGATCATGTTGGAAGCCAAGATACAACTGCAAAATCTGCAGATTTAGATGATGATGAAGGTGGATTGTCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAGTTGGCAGACCGCCACGGTCTTCCTGGAAGCAATGGTGCGGCCACTTTGAATGGGGCTGTTCCTATGCAGCAGGCTGCTAGCTTGCCGATCGGTAATCCAGGTATAATATCTGCACCGGCTCTCCCAGCACAAATCATGCCTACACAAGTGGTAGAACCTGTTGGAACCCCCAGCGAGTGTTTACTGTTGAAGAATATGTTCGATCCTGCCACTGAGACTGAGCCAGATTTTGATTTAGACATCAAAGAGGACGTAGAAGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTATGTTGACAAAAGAAGTGCAGGTTTTGTGTATCTGCAGTTTGAAACAGTGGAAGCTGCAAGTGCCGCTCAACGCGCGATGCACTTGAGATGGTTTGCACGCAGATTGATTTCAGCTATCTTCATGCAACCCCAGCAAACCCATATCCCCTCTCAGTCTCACACAGACACAGTCACTGTCCGCTTCTTCAAAGGTATAGGAGATATGGATAGGTACCAGAGGGTGGAGAAACCCAAGACAGAGAGTCCCATAAACGAGAACGAGATACGCATTACCACACAAGGTAGGATGAGGAATTATATCACTTATGCTACCACTCTCCTCCAGGAGAAAGGGTCCGACGAGATTGTTCTTAAAGCAATGGGCAAAGCTATCAATAAGACTGTGATGATTGCTGAACTGATCAAGAGAAGGATTGTTGGTTTACATCAGAACACTCAAATTGGATCGACTGATATAACGGATACATGGGAGCCACTTGAAGAAGGCCTTCTTCCTTTGGAGACTACTCGTCATGTTTCAATGATTACAATTACTTTGTCAAAGAAAGAATTGGCTACATCCTCCATAGGATACCAACCTCCTCTTCCGGCTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGATGGCTCACCAAGGATGCGAGGAAGAGGGCGTGGTGGTCGTGGAAGGGGCAGGGGTAGAGGAAATTACAATGGAGGGATGGAATATGGTGATGGTTGGGATGGTGGGCGTGGCTATGGTGGCAGAGGACGTGGCCGTGCCAGGGGCCGGGGTTTCCTGGGACGTGGACGAGGCTATGGTGGCCAGTCTGGATACTATGACTATGGTGAATATGATGCACAGCCTGCCCCTCGTGTCCGTGGACGTGGAAGGGGAAGAGGCCGTGGATATGGTCGTAGTTATAGAACAGATGGAGCTGGCCGGGGAGTAGCTGCTTGA 2487 0.495 MDFDEYEYLEKTVEEHDDKDSSKSKKKDSADRSYRKRDVDDDLDAAADDKRSKRSRPDDDNGSKKDRDRDRDRDRDRDRSSRDRERHRSERERDGERSSREKEKERDRDRDREKRDKDGDRDRDKERRDRDRDREKERERREKEKEREREERDRSRRSRSRSERDRDRERERDFESRDGRRFRDKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLDIAGRTIKVSSVTDHVGSQDTTAKSADLDDDEGGLSLNAQSRALLMQKLADRHGLPGSNGAATLNGAVPMQQAASLPIGNPGIISAPALPAQIMPTQVVEPVGTPSECLLLKNMFDPATETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFETVEAASAAQRAMHLRWFARRLISAIFMQPQQTHIPSQSHTDTVTVRFFKGIGDMDRYQRVEKPKTESPINENEIRITTQGRMRNYITYATTLLQEKGSDEIVLKAMGKAINKTVMIAELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELATSSIGYQPPLPADQVKPLNEYEEEGDGSPRMRGRGRGGRGRGRGRGNYNGGMEYGDGWDGGRGYGGRGRGRARGRGFLGRGRGYGGQSGYYDYGEYDAQPAPRVRGRGRGRGRGYGRSYRTDGAGRGVAA* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2873 828 MobiDBLite consensus disorder prediction 1 200 - -
Aev03g2873 828 MobiDBLite consensus disorder prediction 718 743 - -
Aev03g2873 828 CDD RRM1_RBM39_like 201 273 - -
Aev03g2873 828 SUPERFAMILY RNA-binding domain, RBD 301 379 IPR035979 GO:0003676
Aev03g2873 828 MobiDBLite consensus disorder prediction 796 828 - -
Aev03g2873 828 Gene3D - 594 698 IPR036882 GO:0003676
Aev03g2873 828 CDD RRM2_RBM23_RBM39 304 376 - -
Aev03g2873 828 SMART rrm1_1 303 376 IPR000504 GO:0003723
Aev03g2873 828 SMART rrm1_1 201 273 IPR000504 GO:0003723
Aev03g2873 828 SMART rrm1_1 474 551 IPR000504 GO:0003723
Aev03g2873 828 SUPERFAMILY RNA-binding domain, RBD 469 555 IPR035979 GO:0003676
Aev03g2873 828 TIGRFAM SF-CC1: splicing factor, CC1-like family 82 559 IPR006509 GO:0003723|GO:0005634|GO:0006397
Aev03g2873 828 Pfam Alba 599 663 IPR002775 GO:0003676
Aev03g2873 828 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 557 - -
Aev03g2873 828 SUPERFAMILY AlbA-like 596 709 IPR036882 GO:0003676
Aev03g2873 828 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 395 491 IPR029123 -
Aev03g2873 828 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 269 IPR000504 GO:0003723
Aev03g2873 828 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 374 IPR000504 GO:0003723
Aev03g2873 828 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 496 548 IPR000504 GO:0003723
Aev03g2873 828 Gene3D - 298 394 IPR012677 -
Aev03g2873 828 SUPERFAMILY RNA-binding domain, RBD 193 285 IPR035979 GO:0003676
Aev03g2873 828 Gene3D - 126 286 IPR012677 -
Aev03g2873 828 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 380 IPR000504 GO:0003723
Aev03g2873 828 PANTHER CC1-LIKE SPLICING FACTOR 1 557 - -
Aev03g2873 828 MobiDBLite consensus disorder prediction 9 199 - -
Aev03g2873 828 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 277 IPR000504 GO:0003723
Aev03g2873 828 CDD RRM3_RBM39_like 472 554 - -
Aev03g2873 828 Gene3D - 468 572 IPR012677 -
Aev03g2873 828 Coils Coil 133 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2873 Aev-Chr3 28170411 28179760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2873 274 375 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 1.72e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2873 K13091 - gmx:100802446 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g2873 03 28170411 28179760 Aev03g2873 03 28170411 28179760 ECH
Aev03g2873 03 28170411 28179760 Aev08g0620 08 3558559 3567048 PCT