Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2842 ATGACAGGGAAGAGAAACCAAAACCAAAACCAAAACCAAAACCAAAATCAAAACAAGAAGCAAACTAGTCCTGTTGGAAGCCCCACATCAGGGAACATATCAGATGGGTCCAATTCAAAGGAACAAGAGAGGTTCCTCCCAATAGCAAATGTTAGCAGAATCATGAAAAGGGCACTGCCAGCAAATGCAAAAATCTCAAAGGAAGCAAAGGAAACAGTTCAGGAATGTGTGTCTGAGTTCATAAGCTTCATCACAGGTGAGGCCTCTGACAAGTGCCAGAGAGAAAAGAGGAAGACAATCAACGGTGATGATCTTCTTTGGGCCATGACAACACTTGGATTTGAGAACTATGTCGGACCCTTGAAGCTTTACCTCAACAGCTACAGAGAAACAGAGGGAGAGAAGAGTTCTACTGTTGTAAGACAAGATCAAGATCATCACTCTCCAACAGAGCAACCCAATAATGGTGATGATGATGAATTCAATCGTTTTCTACCAATTTTCAACAATGGAGGGTTCTACTCTACTGGGGGGCCACAATTGAATGCTCCGAAGAGCTTCACTCATGAGATTGGATCAGGGATCACAGGTTTCAGAGAGACTTCCACAAACCGTGGCATTGCTCCTCAGACTGTGCTCAACGGTCGTGCTCATGCTGATGCAAATGCTAACAACAGGTTTATGGCACCAAATCTACGTTACAGGGTTGAATGGTAG 717 0.4393 MTGKRNQNQNQNQNQNQNKKQTSPVGSPTSGNISDGSNSKEQERFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKLYLNSYRETEGEKSSTVVRQDQDHHSPTEQPNNGDDDEFNRFLPIFNNGGFYSTGGPQLNAPKSFTHEIGSGITGFRETSTNRGIAPQTVLNGRAHADANANNRFMAPNLRYRVEW* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2842 238 MobiDBLite consensus disorder prediction 134 161 - -
Aev03g2842 238 SUPERFAMILY Histone-fold 42 158 IPR009072 GO:0046982
Aev03g2842 238 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 15 158 - -
Aev03g2842 238 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 158 IPR027113 GO:0001228|GO:0006355|GO:0016602
Aev03g2842 238 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 45 109 IPR003958 -
Aev03g2842 238 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Aev03g2842 238 PRINTS CCAAT-binding transcription factor subunit A signature 111 129 - -
Aev03g2842 238 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Aev03g2842 238 MobiDBLite consensus disorder prediction 1 44 - -
Aev03g2842 238 ProSitePatterns NF-YB/HAP3 subunit signature. 76 92 IPR003956 GO:0005634|GO:0006355|GO:0043565
Aev03g2842 238 Gene3D Histone, subunit A 33 163 IPR009072 GO:0046982
Aev03g2842 238 MobiDBLite consensus disorder prediction 134 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2842 Aev-Chr3 27965972 27966688 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2842 30 142 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.739 1.02e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aev03g2842 CBFD_NFYB_HMF 1.4e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2842 K08065 - gmx:100797721 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g2842 03 27965972 27966688 Aev03g2842 03 27965972 27966688 ECH