Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2776 ATGAAGAGACCACTTGACAGCTCCGATTCTTTGGGTGCCCTCATGACTATTTGTCCATCAACAACAGATGAACAGAGTCCGAGGAACAACCACGTGTACGGAAGGGAGTTCCAATCCATGTTAGACGGACTCGACGAAGAAGGGTGCGTCGAAGAATCGGGACACCACGGCGAGAAGAAGCGCCGTTTAAGCGTTGAACAAGTGAAGGCTTTGGAGAAGAACTTCGAAGTAGAGAACAAGCTCGAACCAGAGAGAAAGGTGAAGCTCGCACAGGAACTTGGGTTGCAGCCAAGACAAGTCGCTGTTTGGTTCCAAAACCGTCGAGCTAGATGGAAAACCAAGCAATTAGAGAGAGATTACGGCGTTCTCAAGGCCAATTACGAATCTCTTAAACTTAACTTGGAAAATCTCCAGCAGGACAATGAAGCCTTACACAAAGAGATTAAGGAATTGAAATCGAGGCTTCAAGGGGAACAACACACTGAAAGCGATGTATCGGTGAAGAAGGAAGAGATGGAAACTCTGCAAGACGACGACTCAGAGGAGAAAACGATGGATTATAACAAGTGCAACCCATCTTCTTTTGAAACGGTGGTTCCTGGATCCGATTCCAAGGAATTGAACTTCAATTGCTTCAACGACAACGACGATGATGGGGTTGGAGCTGCAGCGTCGCTTTTCACCACCACAGATTTCAAAGACGGTTCTTCAGATAGCGATTCAAGCGCAATCTTGAACGAAGAGAACAACAACAGCAGCAGCCCCATTAATAACGCCGCGATTTCTTCATCTGGGGTTCTGCAAAGTCCAAGCCTTTTGATGTCCCCTGGCTCCTCCTCGCTCAATTTCAATTGTTCCTCCTCGTCTTCGCCTTCTTCCATGAACTGCTTCCAGTTCCAGAAAACGTACCAGGCGTCACAGTACGTGAAGATGGAAGAGCACAATTTCTTCAGTGCAGATGAGACCTGCAATTTCTTCTCTGATGAGCAAGCACCCACTCTGCAGTGGTACTGTTCAGAGGAGTGGAGCTATGAGAATTTGAAGAATAACAATAATTAG 1059 0.4674 MKRPLDSSDSLGALMTICPSTTDEQSPRNNHVYGREFQSMLDGLDEEGCVEESGHHGEKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYESLKLNLENLQQDNEALHKEIKELKSRLQGEQHTESDVSVKKEEMETLQDDDSEEKTMDYNKCNPSSFETVVPGSDSKELNFNCFNDNDDDGVGAAASLFTTTDFKDGSSDSDSSAILNEENNNSSSPINNAAISSSGVLQSPSLLMSPGSSSLNFNCSSSSSPSSMNCFQFQKTYQASQYVKMEEHNFFSADETCNFFSDEQAPTLQWYCSEEWSYENLKNNNN* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2776 352 SUPERFAMILY Homeodomain-like 43 116 IPR009057 -
Aev03g2776 352 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Aev03g2776 352 MobiDBLite consensus disorder prediction 153 199 - -
Aev03g2776 352 CDD homeodomain 59 115 IPR001356 GO:0003677
Aev03g2776 352 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 335 - -
Aev03g2776 352 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Aev03g2776 352 MobiDBLite consensus disorder prediction 13 31 - -
Aev03g2776 352 Coils Coil 113 161 - -
Aev03g2776 352 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677
Aev03g2776 352 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677
Aev03g2776 352 MobiDBLite consensus disorder prediction 231 257 - -
Aev03g2776 352 Gene3D - 53 121 - -
Aev03g2776 352 MobiDBLite consensus disorder prediction 1 31 - -
Aev03g2776 352 SMART HOX_1 57 118 IPR001356 GO:0003677
Aev03g2776 352 Pfam Homeodomain 59 112 IPR001356 GO:0003677
Aev03g2776 352 MobiDBLite consensus disorder prediction 153 174 - -
Aev03g2776 352 Pfam Homeobox associated leucine zipper 114 156 IPR003106 GO:0006355|GO:0043565
Aev03g2776 352 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 335 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2776 Aev-Chr3 27539384 27541175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2776 1 339 Homeobox Transcription Factor Family AT2G22430 48.459 1.09e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aev03g2776 Homeodomain 4.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2776 K09338 - gmx:100796213 421.009