Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aev03g2738 | ATGCAGAGCCAACTTGTGTGTAATGGGTGTAGGAGCATCTTGCTTTATCCTAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAATTACCTCTGTCCCTCCACCTGGGATGGAAATGTCTCAACTTTATTGTGGAGGCTGTAGGACATTGCTGATGTACACACGTGGAGCTACAAGCGTGAGATGTTCCTGCTGTCACACTGTAAACCTTGCACCAGTATCAAATCAAGTCGCCCATGTCCATTGTGGGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTCCTTCAGTCAAATGTGCAGTTTGTCAATATGTTACTAATGTCAATATGAGCAATGGAAGGCTTCCAATTCCTGTCCATAGACCTAATGGAACAACCAACTCTGGGACAGTACCTTCTACTTCAACATCAATGCCCCAATCACAGAGCCAAACTGTTGTGGTCGAAAATCCTATGTCAGTTGATTCAAGTGGAAAATTGGTAAGCAATGTTGTTGTTGGAGTTACAACAGATAAGAAATGA | 531 | 0.4388 | MQSQLVCNGCRSILLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPVSNQVAHVHCGNCRTTLMYPYGAPSVKCAVCQYVTNVNMSNGRLPIPVHRPNGTTNSGTVPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK* | 177 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aev03g2738 | 176 | PANTHER | PROTEIN LSD1 | 1 | 174 | IPR040319 | - | |
Aev03g2738 | 176 | MobiDBLite | consensus disorder prediction | 124 | 143 | - | - | |
Aev03g2738 | 176 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 4 | 34 | IPR005735 | - | |
Aev03g2738 | 176 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 81 | 111 | IPR005735 | - | |
Aev03g2738 | 176 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 43 | 72 | IPR005735 | - | |
Aev03g2738 | 176 | MobiDBLite | consensus disorder prediction | 118 | 143 | - | - | |
Aev03g2738 | 176 | Pfam | LSD1 zinc finger | 46 | 70 | IPR005735 | - | |
Aev03g2738 | 176 | Pfam | LSD1 zinc finger | 7 | 31 | IPR005735 | - | |
Aev03g2738 | 176 | Pfam | LSD1 zinc finger | 84 | 108 | IPR005735 | - | |
Aev03g2738 | 176 | PANTHER | LSD1-LIKE PROTEIN | 1 | 174 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aev03g2738 | Aev-Chr3 | 27331955 | 27333577 | Dispersed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-LSD | Aev03g2738 | zf-LSD1 | 1.5e-11 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aev03g2738 | - | - | mtr:MTR_8g089310 | 340.502 |