Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2738 ATGCAGAGCCAACTTGTGTGTAATGGGTGTAGGAGCATCTTGCTTTATCCTAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAATTACCTCTGTCCCTCCACCTGGGATGGAAATGTCTCAACTTTATTGTGGAGGCTGTAGGACATTGCTGATGTACACACGTGGAGCTACAAGCGTGAGATGTTCCTGCTGTCACACTGTAAACCTTGCACCAGTATCAAATCAAGTCGCCCATGTCCATTGTGGGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTCCTTCAGTCAAATGTGCAGTTTGTCAATATGTTACTAATGTCAATATGAGCAATGGAAGGCTTCCAATTCCTGTCCATAGACCTAATGGAACAACCAACTCTGGGACAGTACCTTCTACTTCAACATCAATGCCCCAATCACAGAGCCAAACTGTTGTGGTCGAAAATCCTATGTCAGTTGATTCAAGTGGAAAATTGGTAAGCAATGTTGTTGTTGGAGTTACAACAGATAAGAAATGA 531 0.4388 MQSQLVCNGCRSILLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPVSNQVAHVHCGNCRTTLMYPYGAPSVKCAVCQYVTNVNMSNGRLPIPVHRPNGTTNSGTVPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2738 176 PANTHER PROTEIN LSD1 1 174 IPR040319 -
Aev03g2738 176 MobiDBLite consensus disorder prediction 124 143 - -
Aev03g2738 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Aev03g2738 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 81 111 IPR005735 -
Aev03g2738 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Aev03g2738 176 MobiDBLite consensus disorder prediction 118 143 - -
Aev03g2738 176 Pfam LSD1 zinc finger 46 70 IPR005735 -
Aev03g2738 176 Pfam LSD1 zinc finger 7 31 IPR005735 -
Aev03g2738 176 Pfam LSD1 zinc finger 84 108 IPR005735 -
Aev03g2738 176 PANTHER LSD1-LIKE PROTEIN 1 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2738 Aev-Chr3 27331955 27333577 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Aev03g2738 zf-LSD1 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2738 - - mtr:MTR_8g089310 340.502