LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev03g2677	ATGCCAACCCATCAAGCTCTTTTGTCCCAGAAGGGTGACCCAATGAAGCAGTCTTTGGATCTTTTCTCTCCTGGTCCTACCAAGATTTCATCAATAAATATACCTAAAGAAGTGGGACACGGTGCATGGGAGCTTTTCTCTGGATCCGATACTAGCCTCTTTTCAAGCTCATTGCCTGTTTTGCCACATGAAAAGCTGAACTTAAATGGCATTATCAATGGTCATCAATCTATTGATGACATCTCATCTCGCTTCAAAAAGCCCCATCAAGATGTAGTGGGTAATGGTTCGTTTGGAGATGTCAATTCTTGTGCAAGAGGAACTGTGCTTCCAGATGATGAGGAGGAACTTTTAGCTGGCATAATGGAAGACTTTGACCTAAGTGGTTTGCCAGGCTCTCTTGAGGACATGGAAGAGTATGATCTTTTTGGTAGTGGTGGAGGTTTGGAACTGGAAACTGATCCTCAGGAAAGTCTCAATGTGGGTATTTCAAAACTAAGTTTCTCTGATAGTACTGTTGCCAATGGGTCTCCCCATTATTCTCTGCTTAATGGTGTGGGAACTGTTGCTGGAGAGCATCCATATGGGGAGCACCCTTCTCGAACATTATTCGTTCGGAATATTAATAGTAACGTGGAGGATTCAGAGTTGAGAGCTCTCTTTGAGCAATATGGTGATATTAGGACTCTCTATACTGCTTGTAAGCATCGGGGGTTTGTTATGATATCCTATTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCTCTTCGACGGAGGAAACTTGACATTCACTTCTCAATCCCAAAGGACAATCCAACTGACAAGGACATCAATCAAGGAACCCTGGTAGTTTTCAATTTGGATCCATCTGTTTCTAATGAAGACCTCCTTATAATATTTGGGGCTTATGGCGAGATCAAAGAGATTCGGGAGACACCTCACAAAAGGCATCATAAGTTCATAGAGTTTTATGATGTTAGGGCTGCAGAAGCAGCACTTAAAGCATTAAACAGGAGTGACATAGCTGGTAAACGTATAAAGCTGGAACCTAGCCGGCCTGGAGGAACTCGTCGAAATTTGATGCAGCAAATAAATCAAGAGCTTGAGCTAGATGAATCTAGGACTTTTCGACATCAAGTGGGTTCTCCTGTGGCCAATTCTCCACCTGGTAACTGGTTGCGGTTCAACAGCTCTGTTGAAAGTAATTCATTGCAAACATTCAGTAAATCTCCGGGGTCTAGGATCATGAGTCCATCAACAGGAAACCATTTATCAGGATTAGCTTCAATTTTGCAACCTCAGATATCAAATGCTGTAAAGGATGCAACTGTCGGGAAAGATTATGGAAGGAATAGTCATGGAGAGCACATATTTGCTAGCAGTAGTTCATCACATCTGGAAACATTTCATTCACATTCTCTTCCAGAGCAAAAATTCAGCCAATACAACGGAGCTTTGTCTTCTTTTACTCAATCTGCTTCGAATGGATCCTCAGTTGAAACCTTGCCTGGTCCACAGTATCTATGGGGAAGTTCAAGCCTGCGCTCAGAGCATACCAAACCTTCAGCTTGGTCAACAGCATCCATGGGGCAACCGTTTACTTCAAATGGCAATAGCTGTGGCTTCCCATACTCAGGTCAGAATAGTTCCATCATCGGTGCGTCCGTGAATCATCATGATCATCTTGTTGGCTCTGCTCCATCTGGATTTCCTTTCGAGAGGAACTTTGGAATCCTTTCTAAGTCGCCTGAAACCTCGTTCATGAATCAGGTTGGTTATGGAGGCATAGGTCTGGGGCATAATGATGGAAGTTACATGGTTAATGTGGGTGGGTCAGTTAATGCTGCCATTACTATACCAAGAAATAGGTCTGAAAATGCTCCATCAAACTTCAGTATGGGATTTTCTCCTCGACTTAGCCCTGTGTTTTTGGGTAATGGCTCTTACCCAGGACTTCCACCTACCACCATGGACAGTTTGATGGACCGTGGGCGGAACAGACGGGTAGAGAACAATGGGAGTCAAGTTGATATCGTGAAGATGCAGTTTCAGCTCGATTTGGATAAGATTAAAAACGGCGAAGATACAAGAACTACATTAATGATAAAGAATATCCCAAATAAATATACCTCAAAAATGTTGCTAGCCGCCATTGACGAATATCACAAGGGCACTTATGATTTTCTTTATCTGCCAATTGACTTTAAGAATAAATGCAATGTGGGATATGCATTTATCAACATGCTGTCAGCCTCGCTTATTATTCCATTCTATGAGACATTCAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCTTCTTTGGCATATGCACGGATCCAAGGAAAGGCTGCTCTGGTGAGCCACTTTCAAAACTCAAGTTTGATGAATGAAGACAAGCGCTGCCGCCCAATCGTTTTCCATTCAGAGGGCCCTGAAGCCGATGATAAGATTATTCATGACATTTTTCCCTCCAGCAAACTGAATGTTCATGTTCTTAGGCCAAGTGAGTTACATTCAAGCGATTCTTCCGGAAACCCTTCCAAGGATAGCCCTCCGGCGAGTTCGGAGACAAATTAA	2604	0.4293	MPTHQALLSQKGDPMKQSLDLFSPGPTKISSINIPKEVGHGAWELFSGSDTSLFSSSLPVLPHEKLNLNGIINGHQSIDDISSRFKKPHQDVVGNGSFGDVNSCARGTVLPDDEEELLAGIMEDFDLSGLPGSLEDMEEYDLFGSGGGLELETDPQESLNVGISKLSFSDSTVANGSPHYSLLNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPTDKDINQGTLVVFNLDPSVSNEDLLIIFGAYGEIKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGTRRNLMQQINQELELDESRTFRHQVGSPVANSPPGNWLRFNSSVESNSLQTFSKSPGSRIMSPSTGNHLSGLASILQPQISNAVKDATVGKDYGRNSHGEHIFASSSSSHLETFHSHSLPEQKFSQYNGALSSFTQSASNGSSVETLPGPQYLWGSSSLRSEHTKPSAWSTASMGQPFTSNGNSCGFPYSGQNSSIIGASVNHHDHLVGSAPSGFPFERNFGILSKSPETSFMNQVGYGGIGLGHNDGSYMVNVGGSVNAAITIPRNRSENAPSNFSMGFSPRLSPVFLGNGSYPGLPPTTMDSLMDRGRNRRVENNGSQVDIVKMQFQLDLDKIKNGEDTRTTLMIKNIPNKYTSKMLLAAIDEYHKGTYDFLYLPIDFKNKCNVGYAFINMLSASLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKAALVSHFQNSSLMNEDKRCRPIVFHSEGPEADDKIIHDIFPSSKLNVHVLRPSELHSSDSSGNPSKDSPPASSETN*	868

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev03g2677	867	CDD	RRM3_MEI2_like	706	791	IPR034454	-
	Aev03g2677	867	Gene3D	-	285	383	IPR012677	-
	Aev03g2677	867	SUPERFAMILY	RNA-binding domain, RBD	705	790	IPR035979	GO:0003676
	Aev03g2677	867	CDD	RRM2_MEI2_like	285	355	-	-
	Aev03g2677	867	SMART	rrm1_1	202	270	IPR000504	GO:0003723
	Aev03g2677	867	SMART	rrm1_1	705	781	IPR000504	GO:0003723
	Aev03g2677	867	SMART	rrm1_1	287	355	IPR000504	GO:0003723
	Aev03g2677	867	PANTHER	PROTEIN MEI2-LIKE 2	16	859	-	-
	Aev03g2677	867	Gene3D	-	190	284	IPR012677	-
	Aev03g2677	867	Pfam	RNA recognition motif 2	703	799	IPR007201	-
	Aev03g2677	867	CDD	RRM1_MEI2_like	200	276	IPR034453	-
	Aev03g2677	867	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	16	859	-	-
	Aev03g2677	867	MobiDBLite	consensus disorder prediction	843	867	-	-
	Aev03g2677	867	MobiDBLite	consensus disorder prediction	844	867	-	-
	Aev03g2677	867	SUPERFAMILY	RNA-binding domain, RBD	198	362	IPR035979	GO:0003676
	Aev03g2677	867	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	203	267	IPR000504	GO:0003723
	Aev03g2677	867	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	288	353	IPR000504	GO:0003723
	Aev03g2677	867	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	286	359	IPR000504	GO:0003723
	Aev03g2677	867	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	201	274	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev03g2677	Aev-Chr3	26982040	26986980	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev03g2677	198	343	Eukaryotic Initiation Factors Gene Family	AT1G71770	27.097	3.69e-10	61.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev03g2677	-		-	gmx:100800877	1315.44