LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev03g2659	ATGGCGTTCCAAAACCAATCCATCATGTCAGATTCTTCACAGAGAAAGATGGGAGGAGGAAGGGGGAAGATTGAGATAAAGAGGATAGAGAACACAACAAATCGCCAAGTTACCTTCTGTAAGCGCAGGAATGGGTTGCTCAAGAAGGCATATGAACTATCTGTGCTTTGTGATGCAGAGGTTGCTCTTATTGTCTTCTCAAGCCGTGGCCGCCTCTATGAATATGCTAATAACAGCGTAAGAGCATCTATTGAGAGGTACAAGAAAGCAACTTCAGATTCCTCCAATGGTGGATCCACTTCTGAAGCTAATAATGTTCAGTTTTATCAGCAAGAAGCTGCCAAGTTACGTGCCCAAATCAGTAACCTGCAGAATCACAACAGGCAAATGATGGGTGAGGCCTTGAGCACTATGAATGCCAAGGAACTCAAAAACCTTGAGACCAAATTAGAAAAAGGGATTAGTAGAATTCGTTCCAAAAAGAATGAGTTGCTGTTCGCAGAAATTGAGTACATGCAGAAGAGGGAGATGGAGTTGCATAATAACAACCATTTTCTCAGAGCAAAGATAGCAGAAAGTGAGAAGAGCCAGCAAAATAACAGCAATTACATATTGCCTGATAGTGGCACAAACTATGAACCTATGCAATCTCATCATCAGCAGCAGCAGCAGCAGCAATTTGACTCTCGTGGCTATTTCCAAGTCACTGGATTACAACCCAATGATAATCACTACTTAAGGCAAGATCAGATGTCCCTTCAATTAGTCTAA	771	0.4202	MAFQNQSIMSDSSQRKMGGGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRASIERYKKATSDSSNGGSTSEANNVQFYQQEAAKLRAQISNLQNHNRQMMGEALSTMNAKELKNLETKLEKGISRIRSKKNELLFAEIEYMQKREMELHNNNHFLRAKIAESEKSQQNNSNYILPDSGTNYEPMQSHHQQQQQQQFDSRGYFQVTGLQPNDNHYLRQDQMSLQLV*	257

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev03g2659	256	Pfam	K-box region	100	190	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Aev03g2659	256	Gene3D	-	31	114	IPR036879	GO:0003677\|GO:0046983
	Aev03g2659	256	PRINTS	MADS domain signature	56	77	IPR002100	GO:0003677\|GO:0046983
	Aev03g2659	256	PRINTS	MADS domain signature	21	41	IPR002100	GO:0003677\|GO:0046983
	Aev03g2659	256	PRINTS	MADS domain signature	41	56	IPR002100	GO:0003677\|GO:0046983
	Aev03g2659	256	Coils	Coil	106	133	-	-
	Aev03g2659	256	Coils	Coil	143	163	-	-
	Aev03g2659	256	SMART	madsneu2	19	78	IPR002100	GO:0003677\|GO:0046983
	Aev03g2659	256	ProSiteProfiles	MADS-box domain profile.	19	79	IPR002100	GO:0003677\|GO:0046983
	Aev03g2659	256	PANTHER	MADS BOX PROTEIN	18	249	-	-
	Aev03g2659	256	ProSiteProfiles	K-box domain profile.	106	196	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Aev03g2659	256	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	28	75	IPR002100	GO:0003677\|GO:0046983
	Aev03g2659	256	MobiDBLite	consensus disorder prediction	1	21	-	-
	Aev03g2659	256	PANTHER	AGAMOUSB	18	249	-	-
	Aev03g2659	256	SUPERFAMILY	SRF-like	20	92	IPR036879	GO:0003677\|GO:0046983
	Aev03g2659	256	MobiDBLite	consensus disorder prediction	193	227	-	-
	Aev03g2659	256	CDD	MADS_MEF2_like	20	96	IPR033896	GO:0000977\|GO:0045944
	Aev03g2659	256	ProSitePatterns	MADS-box domain signature.	21	75	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev03g2659	Aev-Chr3	26897957	26901907	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev03g2659	20	256	MADS-box Gene Family	AT3G58780	65.823	1.66e-102	296

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Aev03g2659		K-box	3.1e-28	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev03g2659	K09264		-	gmx:732595	358.607

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev03g2659	03	26897957	26901907	Aev04g0404	04	2585054	2591443	PCT