Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2621 ATGGATAAGGGGGGAAGCAGGGGAAATGGTGAGGTATTGGATCATGTTGATAAAGGGGTGGGTGAGAATTTGAGCCATTTGGTTGAAGGAGTTGCAACTGATACAGATGCTGGAGGTAGATTGGGTGAAAGAGTTAAAGTAATTGGGGAGGATGGAACTTCAGAAGAGATTTGCAGTGATCTGGGTTTGAATATGGAACTAGAGGGTGGCAAGCAAAAAAACAGTGATACATTGTGTGGGGTTGATCAAGGCACTAGTTATAGTTCAAGAAATTTGGTTAGTGGGGAGGTACCTGAGACCCGGGTTGTAATAGATCCTTCTTCTCAGGTTGAGCATGTTAATGGAGATGATGGGAAAATGGAAGCAAAAGTTGGCGAATCAGGGTTGAGCAAGGTATCCAATGAAGCACCAAAAGGGGTGGCTGAGACAGATAAAAATTCATGTGCCATTGATATAAAGTGCGGCAGCTGCACAGGGTTTAGTGAGAATTTGGAAGGTGAAATGATCTGTAGGATTTGCCATCTAGCTTCTGGGCAGCCATTAGAAGAAACAGCTATTGGCACTGCTAATAGTGAAACTAGTACAGATTTGATTCAGCTTGGTTGTGCATGCAAAGATGAGCTAGGCGTTGCACACAGTCATTGTGCTGAGGCTTGGTTCAAGCTTAAAGGCAACAGGTTGTGTGAAATATGCGGCGAGACTGCAAAAAATGTTTCAGCTGTTACTGATAATGGATTTATAGAAGAGTGGAACGAAAGTAGATTCGTCGACAGTGGTAACAATACTAGTACCTCATCATGGGGCATCTTCGGAAGATGCTGGCGTGGACAGCCATTTTGTAACTTCTTAATGGCATGCCTGCGGGATTTACTTTTAAGGGATCAAAGAACCGAAGATATTTACTTGTTGTGGCAGAGCAGCAGCGTCGCTGCCTCGCACAGCGTGGTCGTAAACGACGAGAACGAAAGAATTGCCAAGTTCTGCAAAATGGGTGACCTCACAAATGCCATGAAACTGCTAACTGGGTCCAAAAAATGTGAACTTGAGTTGAACACCTACTGTAATGTGTTGCAGCTCTGTGCTGAAGTCAAGTCTTTGGAAGATGGGAAAAGGGTTCATTCCATTATCAATTCCAATGGAGTGGTGATTGAAGGACTATTAGGTGCAAAACTAGTCTTTATGTATGGGAAATGTGGTGATTTAATTGAAGGGAGAAGGATTTTTGACGAGATCCTCCATGAAAATAAGGTTTTTCTGTGGAATTTCATGATGTCTGAATATGCAAAGGTTGGTGACTACGGGGAAAGTTTGAACCTTTTTCAGAAAATGCAGGAGTTGGGAGTTGCAGGGGATTCTTATACATTTCCTTGTGTCTTGAAGTGTCTTGCTGCATTGGGAAAATTAAGGGATTGTGAAAAGGTTCATGGGTTTATTTTTAAACTGGATTTAGGTTCTTGTAATAGTGTTGTTAACACTCTGATTGGGACTTATTTCAAATGTGGTGGAGTTGAGAGTGCACATAAGCTGTTTGATGAATTTAGTGGTCTAGATGGTGTCTCATGGAATTTAATGATACGCGGCTATTTAATGAATGGTCTTCCCAGAAGTAGTGTTGAGTTTTTCACCCAGATGCTGGTTTCGGGGGTTGATGTGGATTTGGCAACCTTTATTAATGTTCTTGTGGCTTGTGCAGATATTGGCAATTTTTCATTAGGTAGAGCACTTCATGCTTATGGAGTGAAAGCTTGTTTTACTAGGGATGTCATGTTTAATAATACATTGCTAGACATGTATTCAAAATGTGGCAGTTTAAATGGTGCAACCGAAGTTTTTGTGAAGATGGGTGAAACAACAATTGTTTCTTGGACTTCAATAATAGCTGCTTATGTAAGAGAAGGTCTACATGATGATGCTATTGGGTTATTTGAAGAGATGCAAAGCAAGGGTCTTAAGCCAGATATTTATGTTGTCACATGCATTGTTCATGCTTGTGCTTGTAGCAACTCCTTGAATAAAGGAAGGGAAGTACACGATTACATTAGAAAGAATAACCTGGGGTTCAACTTGCCTCTCTCTAATGCTCTCATGAATATGTATGCAAAATGTGGAAGCATGGAAGAAGCCCATTTAGTTTTCTCTCAAATTCCAGTTAGGGACATTGTGTCATGGAACACCATGATTGGAGGTTATTCGAAAAACTCACTTCCCAATGAAGCTCTAAAATATTTTGTGGACATGCAAAAACAATTGAAGCCTGATGAAGTTACAATGGCTTGTGTCCTTCCAGCTTGTGCAAGCTTAGCAGCTCTAGAGAAAGGCAGAGAGGTACATGGTTACTTATTGAGAAAATGGTACTTTTCAGATTTGCATGTAGCCAATGCACTTGTGGATATGTATGTGAAGTGTGGGTTACTAGCTCTTGCACAGAAACTGTTCGATATGATTCCTAAAAAGGATCTGATCTCATGGACTGTTATGGTAGCTGGATATGGCATGCATGGGTTTGGAAATGAGGCAATTTCCACTTTTGACCAGATGAGGATTGCAGGTATTGAGCCTGATGAGCACTCCTTCACTTCTATACTGTATGCTTGCAGTCATTCTGGATTATTGAAAGAGGGATGGGAATTCTTTGATTCCATGAGAAGTGAATACAGCATTGAGCCCAAGCTAGAACACTTTGCTTGCATGGTGGACCTCTTTGCTCGCTCTGGAAATCTATCCAAGGCATACAAGTTCATTAAGACTATGCCAATTAAACCAGATGCTGCAATTTGGGGTGCTTTGCTTTCTTGGTGCAGGGTCCATCATGATGTGAAGCTAGCAGAAAAAGTGGCAGAACATGTATTTGAGCTAGAGCCAGAGAACACCAGATATTATGTTCTTCTAGCAGAAGTCTATGAAGAAGCAGAAAAGTGGGAGGAGGTGAAAAAGTTGCAAGAAAAGATAGGTAAGCGGAGATTGAAAAAGAATCCAGGCTGCAGTTGGATAGAGGTTAAAGGAAATTTTAATATCTTTGTTGCTGGAGATACTTCATACCCTCAAGCGAGAAGAATAGACTCATTTCTGGAAGAACTCAGAATGCAAATGGAGAATGAAGGTTTCTCAACTATTATGAAGCATGCATTGATTAACCCGGATGATATGGAGAAGGAGGTGCTGCAGTGTGGACACAGTGAGAAGTTAGCCATGGCTTTTGGTATATTAAATTTGCCACCTAGGAGGACTGTTAGGGTCACCAAAAATCTGAGAGTCTGTGGAGACTGCCATGAGATGGGGAAGTTCATGTCCAAGACAACCGGGAGGGAAATTGTCTTGAGAGATTCCAACAGGTTTCACCATTTCAAGGATGGATCATGTTCTTGCAGAGGTTTCTGGGAATTAAAATGGGAAGGAATGACAGTAGAAATGCTGCTCAAAGATGAGAGTATGAATGAGGAATTCACTGCTGTGACCTGA 3459 0.414 MDKGGSRGNGEVLDHVDKGVGENLSHLVEGVATDTDAGGRLGERVKVIGEDGTSEEICSDLGLNMELEGGKQKNSDTLCGVDQGTSYSSRNLVSGEVPETRVVIDPSSQVEHVNGDDGKMEAKVGESGLSKVSNEAPKGVAETDKNSCAIDIKCGSCTGFSENLEGEMICRICHLASGQPLEETAIGTANSETSTDLIQLGCACKDELGVAHSHCAEAWFKLKGNRLCEICGETAKNVSAVTDNGFIEEWNESRFVDSGNNTSTSSWGIFGRCWRGQPFCNFLMACLRDLLLRDQRTEDIYLLWQSSSVAASHSVVVNDENERIAKFCKMGDLTNAMKLLTGSKKCELELNTYCNVLQLCAEVKSLEDGKRVHSIINSNGVVIEGLLGAKLVFMYGKCGDLIEGRRIFDEILHENKVFLWNFMMSEYAKVGDYGESLNLFQKMQELGVAGDSYTFPCVLKCLAALGKLRDCEKVHGFIFKLDLGSCNSVVNTLIGTYFKCGGVESAHKLFDEFSGLDGVSWNLMIRGYLMNGLPRSSVEFFTQMLVSGVDVDLATFINVLVACADIGNFSLGRALHAYGVKACFTRDVMFNNTLLDMYSKCGSLNGATEVFVKMGETTIVSWTSIIAAYVREGLHDDAIGLFEEMQSKGLKPDIYVVTCIVHACACSNSLNKGREVHDYIRKNNLGFNLPLSNALMNMYAKCGSMEEAHLVFSQIPVRDIVSWNTMIGGYSKNSLPNEALKYFVDMQKQLKPDEVTMACVLPACASLAALEKGREVHGYLLRKWYFSDLHVANALVDMYVKCGLLALAQKLFDMIPKKDLISWTVMVAGYGMHGFGNEAISTFDQMRIAGIEPDEHSFTSILYACSHSGLLKEGWEFFDSMRSEYSIEPKLEHFACMVDLFARSGNLSKAYKFIKTMPIKPDAAIWGALLSWCRVHHDVKLAEKVAEHVFELEPENTRYYVLLAEVYEEAEKWEEVKKLQEKIGKRRLKKNPGCSWIEVKGNFNIFVAGDTSYPQARRIDSFLEELRMQMENEGFSTIMKHALINPDDMEKEVLQCGHSEKLAMAFGILNLPPRRTVRVTKNLRVCGDCHEMGKFMSKTTGREIVLRDSNRFHHFKDGSCSCRGFWELKWEGMTVEMLLKDESMNEEFTAVT* 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2621 1152 Gene3D Tetratricopeptide repeat domain 576 668 IPR011990 GO:0005515
Aev03g2621 1152 Gene3D Tetratricopeptide repeat domain 669 776 IPR011990 GO:0005515
Aev03g2621 1152 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 551 IPR002885 -
Aev03g2621 1152 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 854 884 IPR002885 -
Aev03g2621 1152 Pfam RING-variant domain 187 231 IPR011016 GO:0008270
Aev03g2621 1152 SUPERFAMILY RING/U-box 167 234 - -
Aev03g2621 1152 Pfam E motif 936 998 IPR046848 -
Aev03g2621 1152 TIGRFAM PPR: pentatricopeptide repeat domain 419 451 IPR002885 -
Aev03g2621 1152 TIGRFAM PPR: pentatricopeptide repeat domain 620 654 IPR002885 -
Aev03g2621 1152 TIGRFAM PPR: pentatricopeptide repeat domain 721 749 IPR002885 -
Aev03g2621 1152 TIGRFAM PPR: pentatricopeptide repeat domain 821 855 IPR002885 -
Aev03g2621 1152 TIGRFAM PPR: pentatricopeptide repeat domain 857 889 IPR002885 -
Aev03g2621 1152 TIGRFAM PPR: pentatricopeptide repeat domain 519 552 IPR002885 -
Aev03g2621 1152 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 819 853 IPR002885 -
Aev03g2621 1152 Gene3D Tetratricopeptide repeat domain 481 575 IPR011990 GO:0005515
Aev03g2621 1152 Gene3D Tetratricopeptide repeat domain 320 480 IPR011990 GO:0005515
Aev03g2621 1152 SUPERFAMILY TPR-like 897 983 IPR011990 GO:0005515
Aev03g2621 1152 SMART ringv_2 169 232 IPR011016 GO:0008270
Aev03g2621 1152 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Aev03g2621 1152 Pfam PPR repeat 693 716 IPR002885 -
Aev03g2621 1152 Pfam PPR repeat 519 549 IPR002885 -
Aev03g2621 1152 Pfam PPR repeat 490 512 IPR002885 -
Aev03g2621 1152 Pfam PPR repeat 592 614 IPR002885 -
Aev03g2621 1152 ProSiteProfiles Zinc finger RING-CH-type profile. 162 238 IPR011016 GO:0008270
Aev03g2621 1152 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN DOT4, CHLOROPLASTIC 436 1098 - -
Aev03g2621 1152 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN DOT4, CHLOROPLASTIC 352 444 - -
Aev03g2621 1152 Pfam PPR repeat family 619 665 IPR002885 -
Aev03g2621 1152 Pfam PPR repeat family 818 866 IPR002885 -
Aev03g2621 1152 Pfam PPR repeat family 417 463 IPR002885 -
Aev03g2621 1152 Pfam PPR repeat family 719 765 IPR002885 -
Aev03g2621 1152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 243 IPR013083 -
Aev03g2621 1152 Gene3D Tetratricopeptide repeat domain 792 1042 IPR011990 GO:0005515
Aev03g2621 1152 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 618 652 IPR002885 -
Aev03g2621 1152 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 719 749 IPR002885 -
Aev03g2621 1152 Pfam DYW family of nucleic acid deaminases 1035 1126 IPR032867 GO:0008270
Aev03g2621 1152 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 436 1098 - -
Aev03g2621 1152 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 352 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2621 Aev-Chr3 26701481 26707053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2621 317 1126 Glycoside Hydrolase AT3G49170 33.978 2.63e-166 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2621 - - gmx:100789088 1294.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g2621 03 26701481 26707053 Aev04g0449 04 2821602 2823667 PCT