Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2560 ATGGCTGATCGGAGCTCGGCCGTTGCGAAACCGGTATGGATGAAGCAGGCCGAGGAAGCGAAGCTGAAGAGCGAGGCCGAGAAAGCCGCCGCTGCCAAAGCCGCATTCGAGGCTACCTTCAAGGATCTCGAGAAAGCTCGCGAAAACAACACCATCACCACCAACAACACCCTCCAATCCGACACTGATTCCGATGACGAGGAGTTCGAGGATCTCGCTAACAAGCCCATCGGCCCTGTAGATCCTTCTAAGTGCACCGCCGCGGGTACTGGGATCGCCGGCGGGACAGCCTGTGCGCCGTCTTCGTTCGTGGTCGTGACGAAGGACACTGACGAGAGGAAGGTTTTGAGCGGCGGAGCTCAGATCAAGGTGAAGGTGACGCCTGGGTTGGGCGTTGGAGGTGCGGATCAGGAAGGGATTGTGAAGGATATGGGCGATGGGACTTATACTGTTACGTATGTGGTGCCGAAGAGAGGGAATTATATGGTCAGTGTTGAGTGTAATGGGAAGCCAATCATGGGTAGTCCCTTCCCTGTGTTCTTCAGTGCAGGTAGTAGTAATGGAGGGGTGCTGGGTTTAGCACCGGCATCTTCATTTCCAAATCTGGTTAACCAAACTATGCCAAACATGCCTAATTACTCTGGGTCTGTTTCCGGAGCATTCCCGGGATTATTGGGAATGATTCCTGGGATTGTTGCTGGAGCCTCTGGGGGTGCTATTTTGCCCGGAATAGGGGCTTCACTAGGGGAAGTTTGTCGTGACTATCTTAATGGACGATGTGCAAAAGTTGATTGTAAGTTGAATCACCCACCTCATAATTTGCTAATGACTGCCTTAGCTGCAACTACCTCAATGGGAACACTTAGTCAAGCTCCGATGGCACCATCTGCTGCTGCAATGGCTGCTGCTCAGGCAATAGTTGCTGCCCAAGCTCTTCAAGCCCATGCAGCTCAGGTGCAAGCTCAGTCAGCAAAAGATTCTGCTGGTTCACCGGAAAAAGCTAGTAAGGATGATGCATTGAAAAAGACTCTCCAAGTTAGCAATCTTAGCCCACTTCTCAATGTGGAACAGCTAAAACAGCTTTTTGGCTTCTGTGGAACTGTTGTTGAATGTACCATCACTGATTCAAAGCATTTTGCTTACATAGGGTACTCAAAACCTGAAGAGGCAACTGCTGCTCTAGCATTAAATAACATGGATGTTGGGGGCCGGCCTTTGAATGTTGAAATGGCCAAATCACTTCCACAGAAACCACCTCTTGCCAATTCTTCTCTTGCTTCATCCTCTCTTCCATTGATGATGCAGCAAGCTGTTGCAATGCAACAGATGCAATTCCAGCAAGCACTGCTTATGCAACAGACTATGACTGCACAACAAGCTGCCAATAGAGCAGCCACCATGAAATCTGCAACAGAGTTAGCAGCAGCCCGAGCTGCTGAAATAAGTAAGAAATTGAAAGCTGATGGACCTGAAATTGAAGAGAAAGAGACAAAACAGAAATCCAGATCACCTTCTCCCCCACGAGCAAGATCTCGATCCAAGTCTAGATCTCCTGTCCGGAGAAGGAGGAGGTCCCGTTCGTACTCACCTTCTCGCTTTTCTAGGGATCGTCGGTCCAGATCACCATTCAGATCCCATCATTATTCAAGCTATGAAAGGGAGAGGCGGTCTTATAGGGACATTAGGGAACACGGAGATAGAAACAGAAGACGTGATTCTGACAGATTACTTGATCGACATCCATCTGCATCAAGAAGAAACAGGAGTAGGAGTGCAAGCCCACATCCAAGAAAATCACATCGAACTGAGTCTGTTTCTCCAAAACGACACAGAGAAGATTCACCTCGTAGAGGAAGGAAACCATCACGTGCTGATTCTGGCTCTCCAAGTCATCGCAGGGGTAGTAGGTCATCTCCAAAGATTGATGAAACCAAACAGAGAAACAGGAGGCGCTCAAGGTCAAGATCTTCAGATGATAAACACACTGTTGAAAAAAATAAAGAATCATCACACTCAAAGTCTAAGTACAGAGAGAGAAGGCGGTCCAGGTCAGTATCTGTGGACGAGAAGCCACACAGGAGGAGCCGATCATCTCCAAGAAGAGTGGATGAAAGTAAATCCAGGCACCGAAAGCGTTCCAGATCGAAATCTGTGGAAGATAAACACTGCTTGCCTGAGAAATCAGATGAAAACAGATATCGAAGGTTAAGGCATAGTGATAAAAGGCATTCCAGATCAAGATCAACTGAAAGTAGGGATCAGACTGATGAAAGAGAGGATGAAAGTAAAAATGAAAAATCAAAACCTCGTGATAGTAGAAGACACAGGTCCAAATCTGTTGATAGGAAGTATCGTTCTAAGGATAGATCGGGTGATATTAAGGATAAGAAATCAAAGCATCGTGATAGAAGACGTTCAAGGTCATTATCATTAGAAGGCAAGTATGAAAAAGGAGGCAGTTCATCACATAGGAATCTGGATGAGGGCAATTTTGAACACAGCTCTATTTCCCCTGAATCCAAGCATCACTCTAGTGATATGTATGGAAGTAGAGGTGAAAGATCAGAGCAACCTGAGAAAACCCTGTCCAAATCAAAATCAGAAAAATATAAGCAAAGTGATGGGGGTTGGATCTCCCCAAGAAAATTGAAGGAGTATGAATCAAAAGGAATAACAGAATCTGATTCTGCATATGCGAGAGACAAAACCTGCAAATCAGAGGGATCAACTGAGAGTGCAGGACCTGATGATAACCCAGACTTGAAGTGTGTAGAAGAAGTGGGAAGTGGAAAATATTAG 2799 0.4648 MADRSSAVAKPVWMKQAEEAKLKSEAEKAAAAKAAFEATFKDLEKARENNTITTNNTLQSDTDSDDEEFEDLANKPIGPVDPSKCTAAGTGIAGGTACAPSSFVVVTKDTDERKVLSGGAQIKVKVTPGLGVGGADQEGIVKDMGDGTYTVTYVVPKRGNYMVSVECNGKPIMGSPFPVFFSAGSSNGGVLGLAPASSFPNLVNQTMPNMPNYSGSVSGAFPGLLGMIPGIVAGASGGAILPGIGASLGEVCRDYLNGRCAKVDCKLNHPPHNLLMTALAATTSMGTLSQAPMAPSAAAMAAAQAIVAAQALQAHAAQVQAQSAKDSAGSPEKASKDDALKKTLQVSNLSPLLNVEQLKQLFGFCGTVVECTITDSKHFAYIGYSKPEEATAALALNNMDVGGRPLNVEMAKSLPQKPPLANSSLASSSLPLMMQQAVAMQQMQFQQALLMQQTMTAQQAANRAATMKSATELAAARAAEISKKLKADGPEIEEKETKQKSRSPSPPRARSRSKSRSPVRRRRRSRSYSPSRFSRDRRSRSPFRSHHYSSYERERRSYRDIREHGDRNRRRDSDRLLDRHPSASRRNRSRSASPHPRKSHRTESVSPKRHREDSPRRGRKPSRADSGSPSHRRGSRSSPKIDETKQRNRRRSRSRSSDDKHTVEKNKESSHSKSKYRERRRSRSVSVDEKPHRRSRSSPRRVDESKSRHRKRSRSKSVEDKHCLPEKSDENRYRRLRHSDKRHSRSRSTESRDQTDEREDESKNEKSKPRDSRRHRSKSVDRKYRSKDRSGDIKDKKSKHRDRRRSRSLSLEGKYEKGGSSSHRNLDEGNFEHSSISPESKHHSSDMYGSRGERSEQPEKTLSKSKSEKYKQSDGGWISPRKLKEYESKGITESDSAYARDKTCKSEGSTESAGPDDNPDLKCVEEVGSGKY* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2560 932 MobiDBLite consensus disorder prediction 805 871 - -
Aev03g2560 932 SMART flmn_3 81 184 IPR001298 GO:0005515
Aev03g2560 932 MobiDBLite consensus disorder prediction 918 932 - -
Aev03g2560 932 PANTHER SPLICING REGULATORY GLUTAMINE/LYSINE-RICH PROTEIN 1 1 722 - -
Aev03g2560 932 MobiDBLite consensus disorder prediction 484 932 - -
Aev03g2560 932 Gene3D - 302 421 IPR012677 -
Aev03g2560 932 PANTHER SPLICING REGULATORY GLUTAMINE/LYSINE-RICH PROTEIN 1 667 907 - -
Aev03g2560 932 MobiDBLite consensus disorder prediction 529 585 - -
Aev03g2560 932 Pfam Filamin/ABP280 repeat 79 177 IPR017868 -
Aev03g2560 932 MobiDBLite consensus disorder prediction 878 907 - -
Aev03g2560 932 SUPERFAMILY RNA-binding domain, RBD 341 422 IPR035979 GO:0003676
Aev03g2560 932 ProSiteProfiles Zinc finger C3H1-type profile. 251 272 IPR000571 GO:0046872
Aev03g2560 932 ProSiteProfiles Filamin/ABP280 repeat profile. 77 181 IPR017868 -
Aev03g2560 932 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 722 - -
Aev03g2560 932 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 667 907 - -
Aev03g2560 932 SUPERFAMILY E set domains 79 179 IPR014756 -
Aev03g2560 932 CDD RRM_SF 344 409 - -
Aev03g2560 932 MobiDBLite consensus disorder prediction 505 528 - -
Aev03g2560 932 MobiDBLite consensus disorder prediction 743 768 - -
Aev03g2560 932 SMART rrm1_1 343 409 IPR000504 GO:0003723
Aev03g2560 932 MobiDBLite consensus disorder prediction 44 83 - -
Aev03g2560 932 MobiDBLite consensus disorder prediction 717 736 - -
Aev03g2560 932 Gene3D Immunoglobulins 79 186 IPR013783 -
Aev03g2560 932 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 342 413 IPR000504 GO:0003723
Aev03g2560 932 Coils Coil 14 46 - -
Aev03g2560 932 MobiDBLite consensus disorder prediction 783 797 - -
Aev03g2560 932 MobiDBLite consensus disorder prediction 484 503 - -
Aev03g2560 932 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 346 406 IPR000504 GO:0003723
Aev03g2560 932 MobiDBLite consensus disorder prediction 596 704 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2560 332 412 Eukaryotic Initiation Factors Gene Family AT1G71770 32.955 9.30e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2560 - - gmx:100790138 1072.38