Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2517 ATGGGAAGAGGAAGAGTGGAACTGAAGAGAATAGAGAACAAGATCAACAGGCAAGTCACCTTTGCAAAACGAAGGAACGGGCTTCTGAAAAAAGCTTATGAGCTTTCCGTTCTCTGCGATGCCGAAGTGGCTCTCATCATCTTCTCCAATAGGGGAAAACTCTACGAGTTTTGCAGCAGCTCAAGCATGCTGAAAACGCTAGAGAGGTACCAGAAAAGTAATTATGGAGCACCGGAAACTAATGTGTCTACCCGGGAAGCTTTGGAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAAGCCCTACAAAGGTCCCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGAGCTCGAGTCACTTGAAAGGCAGCTCGATTCCTCCTTGAAGCAGATTAGATCTACAAGGACTCAATTCATGCTGGATCAGCTCTCTGATCTTCAACGTAAGGAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGGTTGGAAGGGTACCAAATAAATCATCTGCAGCTGAATCCGGGTGTTGATGATATGGGATATTGCCGGCATCCTGTTCAAGCTCATCAGGCTGATGCTCTCTTTCAACCATTGGAATGTGAGCCAACCCTACAAATTGGATATCAGCCTGATCCAGTATCAGTGGTGACAGCAGGCCCAAGCATGAGTAATTACATGGCTGGGTGGTTACCATAG 729 0.4664 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKSNYGAPETNVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHLLSEANRSLRQRLEGYQINHLQLNPGVDDMGYCRHPVQAHQADALFQPLECEPTLQIGYQPDPVSVVTAGPSMSNYMAGWLP* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2517 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aev03g2517 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aev03g2517 242 Coils Coil 126 146 - -
Aev03g2517 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aev03g2517 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Aev03g2517 242 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Aev03g2517 242 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Aev03g2517 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 229 - -
Aev03g2517 242 Coils Coil 152 172 - -
Aev03g2517 242 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev03g2517 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Aev03g2517 242 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev03g2517 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aev03g2517 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev03g2517 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev03g2517 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2517 Aev-Chr3 26074403 26080084 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2517 1 242 MADS-box Gene Family AT1G24260 73.984 1.63e-116 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aev03g2517 K-box 3.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2517 - - gmx:100805078 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g2517 03 26074403 26080084 Aev03g2517 03 26074403 26080084 ECH