Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2516 ATGGGGAAGAAGAAGGTGGAGCTGAAACGAATCGAGAACAAGAGCAGTCGCCAAGTAACGTTCTCGAAGAGGCGCAAGGGATTGATGAAGAAAGCTCGCGAGCTCTCCGTTCTGTGCGACGCCAAGGTCGCGGTGGTCATCTTCTCCAGCCCCGGGAAGCTCTACGAGATGTGCAATGGCGATAGTTTGACCAAGCTCCTCCAACGATACTCGGATCATTTAGGAGCAAGTGATACTGGCTCAAAGCCGGGACTCCTCTTCGAATTTGCAGATATCTGGTCTGATGCAGCATTTTCTCAGTTGGTTAAAAGGCACTTCGGCGTGTCCGAACTTGAGCATCTAAGTGGGAAAGACCTTACAGAACTAGAGGAAATGATTCATGCTGCACTTGCGCAGATTAAAACAGCAAAGATGCGATTGATGATGGAATCTGTAAGGAACCTGGAGAAAAAGGAGCAGGTCCTGAAAAAAGAAAATGAGCTTTTGGAGAAACAGCTTGCTGAAATGGAAAATGCTAATGACATAATGAATACGGCGGTAGCACTGTTAAACGACGATGATGAAGCGGTTGGGATCCACCATAATCTGTTCCCTATCCCTGCACCCGATGCAAGCTAA 618 0.4773 MGKKKVELKRIENKSSRQVTFSKRRKGLMKKARELSVLCDAKVAVVIFSSPGKLYEMCNGDSLTKLLQRYSDHLGASDTGSKPGLLFEFADIWSDAAFSQLVKRHFGVSELEHLSGKDLTELEEMIHAALAQIKTAKMRLMMESVRNLEKKEQVLKKENELLEKQLAEMENANDIMNTAVALLNDDDEAVGIHHNLFPIPAPDAS* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2516 205 ProSiteProfiles K-box domain profile. 82 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev03g2516 205 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 183 - -
Aev03g2516 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Aev03g2516 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aev03g2516 205 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Aev03g2516 205 Coils Coil 119 179 - -
Aev03g2516 205 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Aev03g2516 205 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aev03g2516 205 Pfam K-box region 99 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev03g2516 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aev03g2516 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev03g2516 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev03g2516 205 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Aev03g2516 205 PANTHER BNAC02G43470D PROTEIN 1 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2516 Aev-Chr3 26067862 26073729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2516 1 202 MADS-box Gene Family AT1G26310 39.524 5.92e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aev03g2516 K-box 3.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2516 K09264 - gmx:100804540 248.054