Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2461 ATGGGTCGGCGCAAGATTGAGATCAAGATGGTGAAGGACACCAACACGAGGCAGGTCACTTTCTCCAAGCGCAGAACCGGCCTCTTCAAGAAAGCCAACGAGCTTTCCATCCTCTGCGGCGCCGAGGTTGCTATTGTCGTCTTCTCCCCCGGCAACAAGCCCTACTCCTTCGGCCACCCCGGCGTCGACGCCGTCGCCGCCAAGTACCTCACCCCGCAGGGAGACCAGGAGCAGCAGGACCCACCAACTGATGGCGAGGAAAAGCCAGCAGATTCCGATGCTGATTATGGGAGTGAGGATGAGGCGGAGGAGATGGAGGCGGAGGAGGAGGAGGAGAGGGATGATTCCGATGCTGACGTGGAGAGGATGAACAGGATGCTTGCTGACGTGGCGGGGCAGGTGCGGGAGGCAGAGAGGCAGGGGGCGGTGTACGACGCGGAGCTGGAACAGAGGATGGCGTTGGAAGGGCGCGATGAGCTGCAGGGACTGTTTGATTCGCATGCAGGGCTGAAGGGTCTTGTGAAGGAGCGGATTAAAGAATTGGAGGTTGTGGAGATTATGTTGAATTTTGCTGAAAACGCTGTCGATGGAACATCCAGGAACAAGAGAAGAAGAATCAATTGA 624 0.5737 MGRRKIEIKMVKDTNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPGVDAVAAKYLTPQGDQEQQDPPTDGEEKPADSDADYGSEDEAEEMEAEEEEERDDSDADVERMNRMLADVAGQVREAERQGAVYDAELEQRMALEGRDELQGLFDSHAGLKGLVKERIKELEVVEIMLNFAENAVDGTSRNKRRRIN* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2461 207 MobiDBLite consensus disorder prediction 73 119 - -
Aev03g2461 207 Coils Coil 120 140 - -
Aev03g2461 207 MobiDBLite consensus disorder prediction 93 117 - -
Aev03g2461 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Aev03g2461 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aev03g2461 207 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Aev03g2461 207 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Aev03g2461 207 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 201 - -
Aev03g2461 207 PANTHER MADS BOX PROTEIN 2 201 - -
Aev03g2461 207 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Aev03g2461 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aev03g2461 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev03g2461 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev03g2461 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2461 Aev-Chr3 25721129 25721752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2461 1 89 Type I MADS-box Gene Family AT2G34440 58.427 3.01e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev03g2461 SRF-TF 2.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2461 - - mtr:MTR_4g131030 162.155