Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2453 ATGAATAATCAAAACCAGCAACGTCAGCCTCTTCCTTTGCTAAGCAGCTTCCTTGGTTCAGCTTCTTCAGAAGAAGACTCACCACTTAATCAAAAACTCAAAGCATATCATAGTCAAGTGGAAGATGTCACTGTAGCCTTGCATATAGGCCTCCCTGACAATTCCAATGTGTCCAACAATGATAATGAATCTGTGAACAATAATGCAGAACCTCATGCTGCCAATAATTACTGGATACCAACTGAAGAACAGATTCTCATTGGTTTCAGTCATTTCTCTTGTCCTGTCTGCCACAAAACCTTCAATCGCTATAACAACCTTCAGATGCATATGTGGGGACATGGTTCACAATACAGAAGAGGACCAGATTCTCTGAAAAGAACTCATCCAAGGCCATTATTAGACATAGCATGCTACTGCTGCTCAAGAGGGTGCAAGAACAACATAGAGCACCCAAGAGCAAAGCCTCTGAAGGATTTCAGAACATTGCAAACACACTACAAGAGGAAGCATGGGCCCAAGCCCTTCACATGCCGCAAGTGTGGTAAGCCCCTGGCAGTGAAGGGTGATTGGAGAACACATGAGAAGAACTGTGGCAAAAGATGGCTCTGTCTTTGTGGCTCTGACTTCAAACATAAGAGGTCACTTAAGGACCATATCAAGGCATTTGGCTTTGGTCATAGCCCCTTTTCTTCTTCTTCTTCATCTCACCCTATCTAA 720 0.4347 MNNQNQQRQPLPLLSSFLGSASSEEDSPLNQKLKAYHSQVEDVTVALHIGLPDNSNVSNNDNESVNNNAEPHAANNYWIPTEEQILIGFSHFSCPVCHKTFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDIACYCCSRGCKNNIEHPRAKPLKDFRTLQTHYKRKHGPKPFTCRKCGKPLAVKGDWRTHEKNCGKRWLCLCGSDFKHKRSLKDHIKAFGFGHSPFSSSSSSHPI* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2453 239 Gene3D Classic Zinc Finger 91 114 - -
Aev03g2453 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Aev03g2453 239 PANTHER ZINC FINGER PROTEIN WIP2 9 235 IPR043584 GO:0003700|GO:0010468
Aev03g2453 239 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Aev03g2453 239 Pfam Zinc finger, C2H2 type 92 111 IPR013087 -
Aev03g2453 239 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 9 235 - -
Aev03g2453 239 Gene3D Classic Zinc Finger 148 223 - -
Aev03g2453 239 SMART c2h2final6 176 196 IPR013087 -
Aev03g2453 239 SMART c2h2final6 92 114 IPR013087 -
Aev03g2453 239 SMART c2h2final6 139 171 IPR013087 -
Aev03g2453 239 SUPERFAMILY beta-beta-alpha zinc fingers 161 196 IPR036236 -
Aev03g2453 239 SUPERFAMILY beta-beta-alpha zinc fingers 87 114 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2453 Aev-Chr3 25670995 25672318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2453 43 233 C2H2 Transcription Factor Family AT1G34790 67.157 2.86e-99 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev03g2453 zf-C2H2 0.00056 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2453 - - gmx:547675 383.645