Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2370 ATGGATTATGAAAGGATCCAAAAGCCTCAGGGTGGTGGTGGGTTTTCACCAGGGAAATTGAGGAGCATGCTACTTGGTGTGGAGAAGAAGAGGAAAGAAGAGGAAGAGCTTCATTCCACTTTCACCATGAGATCTCTAAACTCAGACATGGATGAATCTGGTGGTAGCAGTTCTGATCATTGTAAAGATGTAGATGTTGTGAGCGTCCTCCCTGAATGTTCAACTTCAGGTATAGCTCGCACCTTTAGCTTAGACGCAGTTGGGGGTGACTACAATGTGAAGGACAATGCGGCTGTGACTTCGAGGCACAGAATCTTAGAAGACCCTTCTTTGGATTATGATAGTGGGCATGAAAATATGAGCATGCCCTCACCAATGTTCGAGTTTCAAAAGTCTGAGCGTGCTTCGCAGAGACTGCCCGTGGGACCGTTCTCAAAACCAGCACCATCTAAATGGGATGATGCTCAGAAATGGATAGCGAGTCCAACATCAAACAGGCCAAAGGCTGGACAGACCCAGGGGCAAGGTGGACCACGTAAGGTTGGTGCTCTTGGCCGTCAGCCTTCAATGAAGGTTGTCGTTGAAGTTCCAGATCAAAGAGAAATAGCTTTAGATGAGCCAGATACCAAGCAAATGGATACAAATCAAACTAAGATGGAAAGTGGACAGAAGTTTGTGAACTGGGAGGCCGATCCTTATGCAATTGCGAGTTCTTACGTTAGTCTCAGCCGGCATAATTCATCTATTGCTATTCAGAGTGCAACAACATTTGTCCCACCCCCTTCGACAGCTCGGTCTGTATCGATGAGAGATATGGGTACAGAAATGACCCCTATTGCTAGCCAGGAGCCATCAAGAACAGGCACACCGGTGAGGGCAACAACACCAACTCGCAGCCCAAATACTTCTCGGCCTTCAACTCCCAGCAGAGCTGCTCCTTCGTCTCCTTTAACTGATCTATCTGGTGACCATCTGAATCCCAACAAGCATGAATTGTCTGAAAAGGAGCTACAAATGAAAACAAGGCGAGAAATAATGGTCCTTGGGACACAACTAGGTAAAACGAACATTGCTGCCTGGGCTAGCAAGGAAGAAGAGGATAAGGATGCATCGACTTCACTGAAAACTAAAACTGAAACGGCTGACCAACCTGCTAAGACTGTAGTTGAAGCACGTGCAGCAGCATGGGAGGAGGCTGAGAAGGCCAAATACATGGCCAGGTTTAGGCGTGAGGAGATGAAGATTCAGGCATGGGAAAATCATCAGAAAGCCAAAACAGAAGCCCAGATGAGAAAAATTGAGGTAGAGGTTGAAAGAGTACGGAGCAAAGCGCACGATAAGCTCATGAATAAGTTAGCGTCCGTAAGGCACAAGGCAGAGGAAAAGCGATCAGCGGCCGAGGCCAATAGAAACCATCAAGCTGTGAAAACTGAAGAGCAAGCAGATTATATAAGAAGAACTGGGTATTCGAATCTAGCCTCCTTTTTTCCTTCTTCGATTCGATCTCTGTTGGGGTGCTATAACCTACCTCAGCTTTCAACCACCGCCATGGTAGCTCAACACCCACAAACTCAGACTCAGCCTCAGCCTCAATCTCAACCTCAGCAACCTGCTTCATCTGCACAAGACGAGGCCTTGAAGAGGAACACCGATTGCGTCTACTTTCTTGCATCTCCTCTGACATGCAAAAAGGGAAATGAATGTGAATACCGCCATAGCGAGTATGCTCGGGTCAATCCTAGAGATTGCTGGTATTGGTTGAATGGAAATTGCTTGAATCCCAAATGTTCTTTCCGTCATCCGCCTCTTGATGGATTGTTAGGATCACCGGCAGCCACTGCTGGTGGATCATCTGTTCCCGCATCACAGGTTCCAACAACGTCTGCACCTGCAGCACATGCACCTCATAATTCTGGTAAACAAGCTGTCCCTTGCATTTTCTTCCAAAAGGGGCTTTGCTTAAAAGGTGACAGATGTGCCTTCTTGCACGGACCAAATACCAACACTGGTAATAAAGTAGTTACTCCAGTTCCAATGGCTAGCCAGGGAACTGAGGCACCTACTTTTAAGAAGCCATTTGGTGGCAATGAAAAGTATACACAAGAAAGGAAAACTTCTCAAGGAAATGTTGTGAAGTCAGTTGGAGGTCCTGAAGCTAAACCTGCCCAAAAAGTTGAAACTGTTCCACAGAGAAATAGTTTTGAACTGGAGAAGGAGAAGCGCGTGCCGCCACCATCTGCAGGATTTGATAATGAGGCTTCAAGATTTAAGATAACAAGCACTCCGCCAGTGACCAATGGGCCTATGGTAGCCTGGTCTAATCGACCAAATCAAGCCCGTGTGCCAGAAGATCATAGTTTCCACAATGGTAAGGACAGTGATGAATTCCTCAGAGAATCCTCTCCTGGGTTTGATGTTCTTGTTGCTGATGAACTTAGGAATTCTGATTACTACCATGGTGAGGATGAATTTGGTAAAGCAAGAGGTCCAGATGAAAGGGATTCTTTGAATGAATATGATTTAGGACATAACACCGATATTGATCAAGAAAGATTCCGCGCACCCCAACGTTATGACTCATATGATCACACACAAGACCCATACATGTGGGAGCAACATAGAAAGGCATCAGCCCATTTAGAAAGGAGGTCTCACCGCAGATCTGACAGTCCTGACAATGTTGAGGTCTCTGATCTCCGACATCGTCTATCCAAGCGCAGGAGGGTCAATGGTTTAAAATCTGTTGTCAATCATGATTATGCCCATGAGAGCCATGGTGAGGAGCAAAGTCACCGGTTCTCACGTAAGGAACCTTTGAATGAGAGCTCCATTAGCAATCGCTTCCGAGGCAGAATAAAACTTCCGGCAAATGGTGCTGAAGATCAGCCAGAGAGAGAATCAGACAGAGGAAGAACTAGGAGTAGATTGTCATCTGGAAGGTTGCTGGCCCCTCACCAGGGAAGGCTTCAGGATAGAATTAGAGGAAGGGTGCAGGATGATGATAGGAGAAACTTCAGGGATCGGTCATTGGGGGACAGAAGCAGTGATTTTGCAGGGCCAAAAAGCCTTGCTGAACTTAAAAATGGGAGGAGTTCTGAGAACAAGGAGCAGCAATCACTGGGAAAGAGGAAAGGTTTAGGGGAACACTCACAATCTGAAGATGATTTTCAATTTGAAGGTCCAAAACCTCTCAGTGAAATTTTGAAGGAGAAGAGGAGAGGTGGTACTGGTGTATCTGGCAAGAATAGAGATATTATCAATAACTCGGATGATACAGATGCCACAAACACACAAAATGGAGCATCGTCTGAGACAAAGGAAGATGCCAAGAACCACTTACCAGTTAATGAAGAAGAATCAAAGCTTCAGGTCACTGACACAGTTGAAAGGGACATTGATAACACTGATGGGAATCATGATCAAACATACGAGGATGGAATGATCTATGATGAAGCTGCGGAGGATCAGGAGTATGAAGGTGATGATCAGAGGGAAGGCGACTACGATTATGAGCAAGTTGATGAGGGTGACTATGAGTATGTTGATGAGGGCGAAAATCCCGAGCAAGAATACATTGAAGATGAAGAAGATGGGGATGACTTTGCCAAGAAGATTGGTGTCATGACTACATAA 3633 0.4586 MDYERIQKPQGGGGFSPGKLRSMLLGVEKKRKEEEELHSTFTMRSLNSDMDESGGSSSDHCKDVDVVSVLPECSTSGIARTFSLDAVGGDYNVKDNAAVTSRHRILEDPSLDYDSGHENMSMPSPMFEFQKSERASQRLPVGPFSKPAPSKWDDAQKWIASPTSNRPKAGQTQGQGGPRKVGALGRQPSMKVVVEVPDQREIALDEPDTKQMDTNQTKMESGQKFVNWEADPYAIASSYVSLSRHNSSIAIQSATTFVPPPSTARSVSMRDMGTEMTPIASQEPSRTGTPVRATTPTRSPNTSRPSTPSRAAPSSPLTDLSGDHLNPNKHELSEKELQMKTRREIMVLGTQLGKTNIAAWASKEEEDKDASTSLKTKTETADQPAKTVVEARAAAWEEAEKAKYMARFRREEMKIQAWENHQKAKTEAQMRKIEVEVERVRSKAHDKLMNKLASVRHKAEEKRSAAEANRNHQAVKTEEQADYIRRTGYSNLASFFPSSIRSLLGCYNLPQLSTTAMVAQHPQTQTQPQPQSQPQQPASSAQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDGLLGSPAATAGGSSVPASQVPTTSAPAAHAPHNSGKQAVPCIFFQKGLCLKGDRCAFLHGPNTNTGNKVVTPVPMASQGTEAPTFKKPFGGNEKYTQERKTSQGNVVKSVGGPEAKPAQKVETVPQRNSFELEKEKRVPPPSAGFDNEASRFKITSTPPVTNGPMVAWSNRPNQARVPEDHSFHNGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKARGPDERDSLNEYDLGHNTDIDQERFRAPQRYDSYDHTQDPYMWEQHRKASAHLERRSHRRSDSPDNVEVSDLRHRLSKRRRVNGLKSVVNHDYAHESHGEEQSHRFSRKEPLNESSISNRFRGRIKLPANGAEDQPERESDRGRTRSRLSSGRLLAPHQGRLQDRIRGRVQDDDRRNFRDRSLGDRSSDFAGPKSLAELKNGRSSENKEQQSLGKRKGLGEHSQSEDDFQFEGPKPLSEILKEKRRGGTGVSGKNRDIINNSDDTDATNTQNGASSETKEDAKNHLPVNEEESKLQVTDTVERDIDNTDGNHDQTYEDGMIYDEAAEDQEYEGDDQREGDYDYEQVDEGDYEYVDEGENPEQEYIEDEEDGDDFAKKIGVMTT* 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2370 1210 Coils Coil 423 443 - -
Aev03g2370 1210 MobiDBLite consensus disorder prediction 130 184 - -
Aev03g2370 1210 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 531 1209 - -
Aev03g2370 1210 MobiDBLite consensus disorder prediction 519 543 - -
Aev03g2370 1210 MobiDBLite consensus disorder prediction 456 479 - -
Aev03g2370 1210 MobiDBLite consensus disorder prediction 157 172 - -
Aev03g2370 1210 Pfam RNA-binding, Nab2-type zinc finger 644 664 - -
Aev03g2370 1210 MobiDBLite consensus disorder prediction 1081 1104 - -
Aev03g2370 1210 SMART c3hfinal6 547 574 IPR000571 GO:0046872
Aev03g2370 1210 SMART c3hfinal6 639 665 IPR000571 GO:0046872
Aev03g2370 1210 SMART c3hfinal6 579 602 IPR000571 GO:0046872
Aev03g2370 1210 MobiDBLite consensus disorder prediction 359 385 - -
Aev03g2370 1210 MobiDBLite consensus disorder prediction 918 938 - -
Aev03g2370 1210 MobiDBLite consensus disorder prediction 820 902 - -
Aev03g2370 1210 MobiDBLite consensus disorder prediction 731 745 - -
Aev03g2370 1210 MobiDBLite consensus disorder prediction 276 338 - -
Aev03g2370 1210 ProSiteProfiles Zinc finger C3H1-type profile. 639 666 IPR000571 GO:0046872
Aev03g2370 1210 MobiDBLite consensus disorder prediction 24 40 - -
Aev03g2370 1210 ProSiteProfiles Zinc finger C3H1-type profile. 577 603 IPR000571 GO:0046872
Aev03g2370 1210 MobiDBLite consensus disorder prediction 1105 1145 - -
Aev03g2370 1210 MobiDBLite consensus disorder prediction 1028 1078 - -
Aev03g2370 1210 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 531 1209 - -
Aev03g2370 1210 Coils Coil 449 478 - -
Aev03g2370 1210 MobiDBLite consensus disorder prediction 987 1014 - -
Aev03g2370 1210 ProSiteProfiles Zinc finger C3H1-type profile. 546 575 IPR000571 GO:0046872
Aev03g2370 1210 MobiDBLite consensus disorder prediction 613 637 - -
Aev03g2370 1210 MobiDBLite consensus disorder prediction 360 375 - -
Aev03g2370 1210 Pfam Zinc-finger containing family 547 601 IPR041686 -
Aev03g2370 1210 MobiDBLite consensus disorder prediction 682 755 - -
Aev03g2370 1210 MobiDBLite consensus disorder prediction 324 338 - -
Aev03g2370 1210 MobiDBLite consensus disorder prediction 820 1145 - -
Aev03g2370 1210 MobiDBLite consensus disorder prediction 1 59 - -
Aev03g2370 1210 Gene3D - 630 704 - -
Aev03g2370 1210 Gene3D - 536 603 - -
Aev03g2370 1210 MobiDBLite consensus disorder prediction 278 322 - -
Aev03g2370 1210 SUPERFAMILY CCCH zinc finger 640 664 IPR036855 GO:0046872
Aev03g2370 1210 Pfam Remorin, C-terminal region 389 489 IPR005516 -
Aev03g2370 1210 MobiDBLite consensus disorder prediction 615 634 - -
Aev03g2370 1210 MobiDBLite consensus disorder prediction 958 975 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2370 Aev-Chr3 25114913 25123461 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aev03g2370 Remorin_C 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2370 - - gmx:102669253 914.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g2370 03 25114913 25123461 Aev03g2370 03 25114913 25123461 ECH