Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2347 ATGGATGCTTCGAGCGGTTCATGGTTTTCAACCGGCAACGATGAGAGTGGTCACTTTTACGGCTCACGCTATCAGGCGTCAAGAAGGTTGTACCGGCGTCACTCTGCTCAGCAAGTAGCTAGACTTGAAGAAGCGTTCAGGATTTGTCCACACCCTGATGAAAGGGCACGGCTTGAGTTAAGCATGGAACTTGGGCTTGAGCCAAGACAAGTCAAATTCTGGTTTCAAAATAGGAGGACCCAAGAAAAGAATCAAAATGAGCGAATAGATAACTCATCTCTTCGGAGTGAGAATGAGAAGATGCACGCAGAGAACTTCATCATCAGAGAGGCATTGAAGAACATACTCTGCTTATCTTGCGGAAGTCCAACCTTACCAGACGAGCAAGAACAGAGCCAAGTTCGCATGCAGAAACTTCTCATGGAAAACGCATATCTAAAACAACAGTATGAGAAAGTACAACAGCTTCTTGCAAACTACAATGTGATAAGTGGTAGTAATGCAATGTTGGAGCAGAACGTGGCGCCAGTACTGTCTCCTACTACAGCAAGTAATAATTTGCTGAACCCGCAGATTGATGAAATCCCTTCTCTGTCTCAACGCTTTCATGATCTTCTTCAGAACATAACTAGTACTACTACTACTACACCATTTGCTCTTGCTCAAGTTGGTTCTGCCCATGGTGATCAACAAATCAATAGTAGTATTCCCTCCCCTGCTGCAACTGTTGATGATTTTGCTTCCCTTATAGGGAATATTGCTGATAGTGAAGAAAGGGGGAAATTGGAGAAGGTGGCAAGTGATGCTGTGGAAGAGTTAACGCGGCTTCTGAGAATGAATGAGCCTTTCTGGTTCAGGTCGACGGTTGATGGGAAGTTCATGTTTCAGCGTGAAAGCTACGACAAGATGTTTCAGAAAGGTAAACGGTTGAAGGGTCAACGGAGTCGCAGAGAGTCATCCAAAGATTCAAGATTGGTCTTCATGAGTGGGCCCCAGTTAGTTGATACCTTGTTAGATTCGGGAAAATGGGTTGGGATGTTCCCAACAATTGTGAGAAGAGCATATACACTTGAAGTGGTTGAGAATGGTATGGCAGAGAGCCGAAGTGGAGCTTTGCATCTGATGTATGGAGAAATGCACATTCTGTCACCCATGGTTCCATCTAGGGAGTTCTACTTCCTTCGCTCCTGTGTACAAGTGGATGTAGGTGCGTGGGTTATAGCCGATGTCTCCTTCAATTCCTCTAAATTCAGCACCAAAACTTCAGCTTGGAGGCTTCCCTCTGGATGCTTGATTCAAGACATGAATGATGGCTCATCCAGGGTTACTTGGGTGGAGCATGTGGAAGTGAATGACAAGTTCCAAAATCATCAGATTTTGAAAGAGCTTGTTTGCGAGGGCAATGCGTTTGGAGCAGAGAGATGGGTTTTGACACTTGAGAGAATGTGTGAGAGAGTTGCATTCGCCTCAATGCAACAAATACCAAGCTCTGATGCTGGAGGAGTGATTACATTAGGTGAAGGAAGGAGGAGTGTGATGCAATTAGCAGAGCGAATGGTGAGGCTGTTTTGCAGAGCATTGTCAGATGAAACGGAAATCCCATATGTAAGGATGGACAATTGTGGTGTTAGGGTCTCTGTTCGAAACGTTATAGCGGAAGGAGAGCCAAATGGCATTATTGTCTGTGCCGCTACCTCCTTTTCGCTTCCTCTCTCGCCTCTCTCCGTTTTTCAATACCTCAAACATCCATCCACAAGACATCAGTGGGATGTTCTTTGCCATGGGAATCCAGTGAGCCAGATTCAACACATCTCAAATGGATCTCATCCTGACAACTGTACATCGTTTTTTCAGCCTAATATCCCGGACGATAACAACATGATGCTGCTGCAAGAAAGCTGCGTGGACAAATTGGGATGCATGATGGTGTATGCTCCGGTGGATGTGACGACCATAAGTGCGGCAATGGCGGGAGAAGACACATCGACGCTGCCAATTCTTCCCACCGGAATCACCATAGCCGGTGCCGGAGGAGGAGGGTCGATAGTAACTGTGGTGATTCAGGTGCTCCTTTGCAGCCAATCTTCAATGGACCCCGAACTCTACTTGATGGAATCTGTCACTTCTATCAACGCCCTCGCCACCTCCACCGTCGAGAACATCAAGCTGGCTTTGGGTTGTTCCGAATCACTCTAG 2196 0.4631 MDASSGSWFSTGNDESGHFYGSRYQASRRLYRRHSAQQVARLEEAFRICPHPDERARLELSMELGLEPRQVKFWFQNRRTQEKNQNERIDNSSLRSENEKMHAENFIIREALKNILCLSCGSPTLPDEQEQSQVRMQKLLMENAYLKQQYEKVQQLLANYNVISGSNAMLEQNVAPVLSPTTASNNLLNPQIDEIPSLSQRFHDLLQNITSTTTTTPFALAQVGSAHGDQQINSSIPSPAATVDDFASLIGNIADSEERGKLEKVASDAVEELTRLLRMNEPFWFRSTVDGKFMFQRESYDKMFQKGKRLKGQRSRRESSKDSRLVFMSGPQLVDTLLDSGKWVGMFPTIVRRAYTLEVVENGMAESRSGALHLMYGEMHILSPMVPSREFYFLRSCVQVDVGAWVIADVSFNSSKFSTKTSAWRLPSGCLIQDMNDGSSRVTWVEHVEVNDKFQNHQILKELVCEGNAFGAERWVLTLERMCERVAFASMQQIPSSDAGGVITLGEGRRSVMQLAERMVRLFCRALSDETEIPYVRMDNCGVRVSVRNVIAEGEPNGIIVCAATSFSLPLSPLSVFQYLKHPSTRHQWDVLCHGNPVSQIQHISNGSHPDNCTSFFQPNIPDDNNMMLLQESCVDKLGCMMVYAPVDVTTISAAMAGEDTSTLPILPTGITIAGAGGGGSIVTVVIQVLLCSQSSMDPELYLMESVTSINALATSTVENIKLALGCSESL* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2347 731 ProSiteProfiles START domain profile. 255 488 IPR002913 GO:0008289
Aev03g2347 731 SMART START_1 264 485 IPR002913 GO:0008289
Aev03g2347 731 Gene3D - 15 91 - -
Aev03g2347 731 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 26 725 - -
Aev03g2347 731 Pfam START domain 265 485 IPR002913 GO:0008289
Aev03g2347 731 CDD START_ArGLABRA2_like 266 484 - -
Aev03g2347 731 Pfam Homeodomain 28 84 IPR001356 GO:0003677
Aev03g2347 731 SMART HOX_1 27 89 IPR001356 GO:0003677
Aev03g2347 731 SUPERFAMILY Bet v1-like 506 690 - -
Aev03g2347 731 SUPERFAMILY Bet v1-like 257 486 - -
Aev03g2347 731 SUPERFAMILY Homeodomain-like 5 86 IPR009057 -
Aev03g2347 731 CDD homeodomain 28 86 IPR001356 GO:0003677
Aev03g2347 731 Coils Coil 136 156 - -
Aev03g2347 731 Gene3D - 264 465 IPR023393 -
Aev03g2347 731 ProSiteProfiles 'Homeobox' domain profile. 25 85 IPR001356 GO:0003677
Aev03g2347 731 ProSitePatterns 'Homeobox' domain signature. 60 83 IPR017970 GO:0000981|GO:0006355
Aev03g2347 731 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 26 725 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2347 Aev-Chr3 24967151 24972517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2347 28 725 Homeobox Transcription Factor Family AT1G73360 40.715 1.98e-178 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aev03g2347 START 1.3e-34 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2347 K09338 - rcu:8266520 605.52