Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2346 ATGAGTGGTGAGGACAGGCCAAATATGCATGAGCAAACTGGTTGCTTTGATCCCATCACAATGACAGAAGGTGTTACCTCTCTAAATGATAATAGCTTCCCTCAAATTCTGCCACACTCATCATCAGCATCACCACTTTTGGTTTCATGCAACAACACCACAAACAGCAATAACAATAATAATAGCCTTGAAGAAAATATCAGAGTTTCCATGGAGGAGTTATCCTATCACCATCACAATCAACAACAGCAAGAAGATATCTCCACCTATGCAAATGGAGTCTCTGCTACATCTATAGACATATCACATCAGCAGCATCTGGGTTTGAACATGGGGAACTCCTACAACAACAACAACATGGACAACCATTTGGTTCAACATGAAATTGATGTTCTTCCCTATCAGCAATCCACTTGGGACCCTAGTGTTCAGGAAATGCAAGACATGGGCTATGCTCATCACCATGAACACCAACCACAAAATCAGCAACAGTTTCATCAAATTGAGGCACAGAATTGCAGCCAAAGTTACAATTCTTCCACCATATTGGACCCTCCTTACCCTTCACCTGATCTCCTAAACCTTCTCCACTTGCCCAGATGCTCAGCTTCATCATTGCTCACTAACCCGGCCATCTGCATCACAAACAAGACTCCGAATTTTCAGAATCCAATGGGGTTTCTTGGAGACCTTCCAATAGGATCAGACAGCACAAGTGCATCCTCAGTTTTGATTGATCCTTTGTTCCATTTGAACCTGCCTCCACAGCCTCCAGCACTCAGAGAGCTGTTTCAGTCTCTTCCCCGTGGCTACAGCTTGCCGACGAGCTCCAGGAACGGTTCTCTCTTTGGTGGAGGGGATGAAATAGAAGGAGATGGGAGCCAGCTTGACATGGGAGTGCTAGATTTCAATAGGGTCACAGCTTCTGTTGGCAAAGGAAGAGAAGGAAAAGGTACCAAACACTTTGCAACTGAGAAACAAAGAAGAGAGCAATTGAATGGAAAATACAAAATCTTGAGGAGTCTTATCCCAAACCCTACCAAGATTGATAGGGCGTCTGTGGTGGGCGATGCCATTGATTATATAAGGGAGCTGCTCAGAACAGTCAATGAGCTCAAATTACTGGTGGAGAAGAAAAGATATGGGAAGGAGAGGTGCAAGAGGCTGAAAACTGAAGATGATGCTGCTGAGAGCTGTAACATTAAGCCTTTCAGTGATCCAGATGGGTGCATAAGGACTTCATGGCTGCAGAGGAAATCAAAAGACAGTGAGGTTGATGTCCGGATCATCGATGATGATGTCACAATCAAACTCTTCCAGAGGAAGAAGATTAACTGCCTGCTTTATGTCTCCAAGGTTGTGGATGAACTTCAGTTGGAACTCCACCATGTTGCAGGTGGACATGTTGGGGAATATTGCAGTTTCTTGTTCAACAGCAAGATAATTGAAGGTTCTTCAGTGTATGCAAGTGCAATAGCCAATAGGGTGATTGATGTTATGGACACTCAATATGCAGCAGCAGTTCCACAGACAAGTAGCTATTAG 1545 0.4408 MSGEDRPNMHEQTGCFDPITMTEGVTSLNDNSFPQILPHSSSASPLLVSCNNTTNSNNNNNSLEENIRVSMEELSYHHHNQQQQEDISTYANGVSATSIDISHQQHLGLNMGNSYNNNNMDNHLVQHEIDVLPYQQSTWDPSVQEMQDMGYAHHHEHQPQNQQQFHQIEAQNCSQSYNSSTILDPPYPSPDLLNLLHLPRCSASSLLTNPAICITNKTPNFQNPMGFLGDLPIGSDSTSASSVLIDPLFHLNLPPQPPALRELFQSLPRGYSLPTSSRNGSLFGGGDEIEGDGSQLDMGVLDFNRVTASVGKGREGKGTKHFATEKQRREQLNGKYKILRSLIPNPTKIDRASVVGDAIDYIRELLRTVNELKLLVEKKRYGKERCKRLKTEDDAAESCNIKPFSDPDGCIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKINCLLYVSKVVDELQLELHHVAGGHVGEYCSFLFNSKIIEGSSVYASAIANRVIDVMDTQYAAAVPQTSSY* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2346 514 PANTHER TRANSCRIPTION FACTOR BHLH91 9 511 IPR045895 GO:0006355|GO:0048658
Aev03g2346 514 PANTHER TRANSCRIPTION FACTOR BHLH91 9 511 - -
Aev03g2346 514 Pfam Helix-loop-helix DNA-binding domain 319 365 IPR011598 GO:0046983
Aev03g2346 514 Gene3D - 313 394 IPR036638 GO:0046983
Aev03g2346 514 SMART finulus 322 371 IPR011598 GO:0046983
Aev03g2346 514 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 316 365 IPR011598 GO:0046983
Aev03g2346 514 CDD bHLH_AtMYC1_like 321 385 IPR045896 -
Aev03g2346 514 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 314 378 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2346 Aev-Chr3 24952039 24953749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2346 9 514 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G06170 36.852 1.68e-85 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aev03g2346 HLH 8.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2346 - - gmx:100782512 784.252