Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2317 ATGGCAGAAGCTGGTCCTTCATCCTCGGCGGCGGTTGCAGCCAAGCGGCGGCGCGTGACGAACGCGCCGGATGACATGGACTTCGAGACGACGGAGGGAGTAAAGGTGATCGCGAGCTTCGAGGACATGGGGATAAAGGACGACCTCCTCCGGGGAATCTACCAGTACGGATTCGAAAAGCCCTCCGCCATCCAGCAACGCGCCGTCTTGCCCATCATCCAGGGCCGTGATGTCATCGCCCAGGCCCAGTCCGGCACCGGCAAGACCTCCATGATCGCCCTCACCGTCTGCCAGCTCGTCGACACCTCCGTCCGAGAGGTTCAGGCGTTGATCGTGTCGCCGACGAGGGAGCTGGCGGCGCAGACGGAGAAGGTGATATTGGCGATAGGTGATTTCATCAACATTCAGGCGCATTCGTGCATTGGAGGGAAGAGTGTTGGTGAAGATATAAGGAAGCTGGAGTATGGAGTTCATGTGGTGTCTGGAACCCCTGGAAGGGTTTGTGACATGATCAAGAGGAGGACTTTGAGGACTAGAGCTATCAAGTTATTGGTTCTTGATGAATCTGATGAGATGTTGAGCAGAGGGTTTAAAGATCAAATTTATGATGTGTATAGGTACCTCCCACCAGATCTTCAGGTTGTCTTGATTTCTGCCACTCTCCCTCATGAAATACTGGAGATGACTAGTAAGTTCATGACAGATCCTGTGAGGATCCTTGTAAAACGTGATGAATTGACATTGGAGGGCATCAAGCAATTTTTTGTTGCAGTTGAAAGGGAGGAATGGAAATTTGATACCCTATGTGATCTTTATGATACACTCACTATCACTCAGGCTGTTATATTTTGTAACACTAAACGGAAGGTGGATTGGTTGACTGAAAAAATGCGCAACAATAATTTCACTGTCTCATCAATGCATGGTGACATGCCTCAGAAAGAAAGAGATGCTATCATGGCAGAATTTCGGGCCGGAACTACCAGAGTGCTAATAACCACGGATGTCTGGGCCCGTGGCCTTGATGTACAGCAGGTTTCTCTAGTTATCAATTATGACCTTCCAAATAATCGAGAGCTATACATTCACCGAATTGGCCGCTCTGGGCGTTTTGGACGCAAGGGTGTTGCAATAAACTTTGTCAAAAGTGATGATATAAAGATCCTGAGAGATATCGAGCAATATTACAGTACTCAGATTGATGAAATGCCAATGAATGTTGCTGATCTTATATAA 1236 0.4822 MAEAGPSSSAAVAAKRRRVTNAPDDMDFETTEGVKVIASFEDMGIKDDLLRGIYQYGFEKPSAIQQRAVLPIIQGRDVIAQAQSGTGKTSMIALTVCQLVDTSVREVQALIVSPTRELAAQTEKVILAIGDFINIQAHSCIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMAEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2317 411 CDD SF2_C_DEAD 251 381 - -
Aev03g2317 411 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 38 66 IPR014014 GO:0003724
Aev03g2317 411 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 394 IPR027417 -
Aev03g2317 411 Gene3D - 243 411 IPR027417 -
Aev03g2317 411 Pfam DEAD/DEAH box helicase 63 225 IPR011545 GO:0003676|GO:0005524
Aev03g2317 411 Gene3D - 23 242 IPR027417 -
Aev03g2317 411 SMART helicmild6 291 372 IPR001650 -
Aev03g2317 411 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 250 411 IPR001650 -
Aev03g2317 411 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 24 404 - -
Aev03g2317 411 CDD DEADc_EIF4AIII_DDX48 40 240 - -
Aev03g2317 411 Pfam Helicase conserved C-terminal domain 264 372 IPR001650 -
Aev03g2317 411 PANTHER BNAC03G41130D PROTEIN 24 404 - -
Aev03g2317 411 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 69 239 IPR014001 -
Aev03g2317 411 SMART ultradead3 57 254 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2317 Aev-Chr3 24785553 24788324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2317 24 411 Eukaryotic Initiation Factors Gene Family AT3G19760 88.660 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2317 K13025 - gmx:100795032 756.518